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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4a33PS8Glycylpeptide N-tetradecanoyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4a33PS8Glycylpeptide N-tetradecanoyltransferase/1.000
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.661
4a2zVIQGlycylpeptide N-tetradecanoyltransferase/0.640
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.609
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.585
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.573
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.536
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.511
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.504
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.502
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.495