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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3zlnH0YBcl-2-like protein 1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3zlnH0YBcl-2-like protein 1/1.000
3zloX8UBcl-2-like protein 1/0.522
3zk6H1IBcl-2-like protein 1/0.457
3cw901A4-chlorobenzoyl CoA ligase/0.450
1cbrREACellular retinoic acid-binding protein 1/0.448
4isk1JYThymidylate synthase/0.444
4ia3BIVVitamin D3 receptor A/0.442
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.440