Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3zkuHCVIsopenicillin N synthase1.21.3.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3zkuHCVIsopenicillin N synthase1.21.3.11.000
4bb3KKAIsopenicillin N synthase1.21.3.10.708
3zkyWT4Isopenicillin N synthase1.21.3.10.691
1hb3SCVIsopenicillin N synthase1.21.3.10.646
1hb1OCVIsopenicillin N synthase1.21.3.10.616
2iviACWIsopenicillin N synthase1.21.3.10.609
1bk0ACVIsopenicillin N synthase1.21.3.10.608
2y6fM9FIsopenicillin N synthase1.21.3.10.597
2vbdV10Isopenicillin N synthase1.21.3.10.590
1qiqACCIsopenicillin N synthase1.21.3.10.585
1odnAPVIsopenicillin N synthase1.21.3.10.576
2jb4A14Isopenicillin N synthase1.21.3.10.570
1blzACVIsopenicillin N synthase1.21.3.10.557
2vcmM11Isopenicillin N synthase1.21.3.10.550
2y60M8FIsopenicillin N synthase1.21.3.10.543
1oc1ASVIsopenicillin N synthase1.21.3.10.539
1uzwCDHIsopenicillin N synthase1.21.3.10.539
3zoiM2WIsopenicillin N synthase1.21.3.10.536
1obnASVIsopenicillin N synthase1.21.3.10.535
2bu9HFVIsopenicillin N synthase1.21.3.10.528
1w06W05Isopenicillin N synthase1.21.3.10.527
2vbpVB1Isopenicillin N synthase1.21.3.10.519
2bjsACVIsopenicillin N synthase1.21.3.10.513
1qjfACSIsopenicillin N synthase1.21.3.10.512
2wo7ASVIsopenicillin N synthase1.21.3.10.507