scPDB - Distribution of Binding site Similarity values of 3x03 entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3x03	ANP	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	2.7.1.149

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3x03	ANP	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	2.7.1.149	1.000
3x02	5GP	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	2.7.1.149	0.629
3x04	GNP	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	2.7.1.149	0.613
3x0c	5GP	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	2.7.1.149	0.561
3x06	5GP	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	2.7.1.149	0.556
3x0a	5GP	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	2.7.1.149	0.554
1qiq	ACC	Isopenicillin N synthase	1.21.3.1	0.546
2y6f	M9F	Isopenicillin N synthase	1.21.3.1	0.501
2vcm	M11	Isopenicillin N synthase	1.21.3.1	0.500
1qjf	ACS	Isopenicillin N synthase	1.21.3.1	0.495
1hb3	SCV	Isopenicillin N synthase	1.21.3.1	0.493
3zoi	M2W	Isopenicillin N synthase	1.21.3.1	0.493
4k88	HFG	Bifunctional glutamate/proline--tRNA ligase	6.1.1.15	0.492
1oc1	ASV	Isopenicillin N synthase	1.21.3.1	0.488
1blz	ACV	Isopenicillin N synthase	1.21.3.1	0.486
1obn	ASV	Isopenicillin N synthase	1.21.3.1	0.486
2wo7	ASV	Isopenicillin N synthase	1.21.3.1	0.486
2vbp	VB1	Isopenicillin N synthase	1.21.3.1	0.483
1hb1	OCV	Isopenicillin N synthase	1.21.3.1	0.482
2jb4	A14	Isopenicillin N synthase	1.21.3.1	0.482
1w06	W05	Isopenicillin N synthase	1.21.3.1	0.474
2ivi	ACW	Isopenicillin N synthase	1.21.3.1	0.474
3hu2	AGS	Transitional endoplasmic reticulum ATPase	3.6.4.6	0.471
2vqq	TFG	Histone deacetylase 4	3.5.1.98	0.468
1fds	EST	Estradiol 17-beta-dehydrogenase 1	1.1.1.62	0.467
2y60	M8F	Isopenicillin N synthase	1.21.3.1	0.464
4b2g	V1N	Uncharacterized protein	/	0.462
1bk0	ACV	Isopenicillin N synthase	1.21.3.1	0.461
3hu1	AGS	Transitional endoplasmic reticulum ATPase	3.6.4.6	0.460
2bu9	HFV	Isopenicillin N synthase	1.21.3.1	0.456
4xq6	FMN	Dihydroorotate dehydrogenase (quinone)	/	0.455
3g72	A6T	Renin	3.4.23.15	0.454
2xnn	430	Serine/threonine-protein kinase Nek2	2.7.11.1	0.452
2vbd	V10	Isopenicillin N synthase	1.21.3.1	0.450
1pkf	EPD	Epothilone C/D epoxidase	1.14	0.449
2vqo	TFG	Histone deacetylase 4	3.5.1.98	0.449
2yg3	FAD	Putrescine oxidase	/	0.449
3a1l	2CC	Cytochrome P450	/	0.449
4j6i	1JV	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.449
3zky	WT4	Isopenicillin N synthase	1.21.3.1	0.448
4jvm	XDI	Estrogen sulfotransferase	2.8.2.4	0.448
3upk	UD1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	/	0.447
3hu3	AGS	Transitional endoplasmic reticulum ATPase	3.6.4.6	0.446
3ptz	UDX	UDP-glucose 6-dehydrogenase	1.1.1.22	0.446
5fm7	ADP	RuvB-like helicase	/	0.446
1ewy	FAD	Ferredoxin--NADP reductase	1.18.1.2	0.445
4e37	NDP	Catalase	1.11.1.6	0.444
4ky4	04J	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.444
4a95	9MT	Glycylpeptide N-tetradecanoyltransferase	/	0.443
1mkd	ZAR	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	3.1.4.53	0.441
2xjc	5GP	Cytosolic purine 5'-nucleotidase	3.1.3.5	0.441
2y4l	GDP	Uncharacterized protein	/	0.441
4jib	1L6	cGMP-dependent 3',5'-cyclic phosphodiesterase	3.1.4.17	0.441
4jvn	YUG	Estrogen sulfotransferase	2.8.2.4	0.441
2zs9	ADP	Pantothenate kinase	2.7.1.33	0.440