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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3wxyCOAUncharacterized protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3wxyCOAUncharacterized protein/1.000
3wy0COAUncharacterized protein/0.585
1ee0CAA2-pyrone synthase/0.500
3wd7COAAcridone synthase/0.497
4jd3COAAlpha-pyrone synthesis polyketide synthase-like Pks112.3.10.483
4jaqCOAAlpha-pyrone synthesis polyketide synthase-like Pks112.3.10.463
2d52COA5,7-dihydroxy-2-methylchromone synthase2.3.1.2160.456
2d3mCOA5,7-dihydroxy-2-methylchromone synthase2.3.1.2160.453
3abaFLICytochrome P450/0.445
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.443
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.442