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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3wgnGSPCell division protein FtsZ

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3wgnGSPCell division protein FtsZ/1.000
3vo8GDPCell division protein FtsZ/0.582
1dliUDXUDP-glucose 6-dehydrogenase/0.499
3ioeA7DPantothenate synthetase6.3.2.10.471
3juqAKDPhenazine biosynthesis protein A/B/0.470
1o97FADElectron transfer flavoprotein subunit alpha/0.468
3iwkNADAminoaldehyde dehydrogenase/0.466
4bfuZVUPantothenate kinase2.7.1.330.464
3opxU5PSuppressor of disruption of TFIIS/0.459
4hn1TYDdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.459
1mewXMPInosine-5'-monophosphate dehydrogenase/0.458
4i9n1E5L-lactate dehydrogenase A chain1.1.1.270.458
4jlm1NNDeoxycytidine kinase2.7.1.740.458
3sqxANPATP-dependent RNA helicase MSS116, mitochondrial3.6.4.130.457
1pqc444Oxysterols receptor LXR-beta/0.455
2whqHI6Acetylcholinesterase3.1.1.70.454
3iqhTYR_ASP_ILECysteine synthase2.5.1.470.454
4a81DXCMajor pollen allergen Bet v 1-A/0.454
4gxs0YSGlutamate receptor 2/0.454
1r2jFADFkbI/0.453
4prxADPDNA gyrase subunit B/0.453
1dljUGAUDP-glucose 6-dehydrogenase/0.452
1nlmUD1UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase/0.452
1xzqFONtRNA modification GTPase MnmE3.6.50.450
2pauD5M5'-deoxynucleotidase YfbR/0.450
4dptAGSMevalonate diphosphate decarboxylase/0.450
4pzsACOHistone acetyltransferase p300/0.450
1jdtMTAPurine nucleoside phosphorylase/0.449
2g1r3IGRenin3.4.23.150.449
4lzwTHMUridine phosphorylase/0.449
2vhqATPNTPase P4/0.448
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.448
3g1rNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.448
4dan2FAPurine nucleoside phosphorylase DeoD-type2.4.2.10.448
5stdUNNScytalone dehydratase4.2.1.940.447
3clrFADElectron transfer flavoprotein subunit alpha/0.446
3sxjSAMPutative methyltransferase/0.445
1xh7R96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444
3qi4IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
3vilSA0Beta-glucosidase/0.444
3vsxR32Renin3.4.23.150.444
1nhkCMPNucleoside diphosphate kinase2.7.4.60.442
1sq5ADPPantothenate kinase2.7.1.330.442
4dh0MR8Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.442
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.442
4jkyADPAdenylate kinase/0.442
5dw60T1Succinyl-CoA:acetate CoA-transferase/0.442
1v35NAIEnoyl-ACP reductase/0.441
1zp9ATPRIO-type serine/threonine-protein kinase Rio12.7.11.10.441
2iko7IGRenin3.4.23.150.441
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
3iqiASN_GLU_ASN_ILECysteine synthase2.5.1.470.441
2w6qOA5Biotin carboxylase6.3.4.140.440
3dhcCYKN-acyl homoserine lactonase AiiA3.1.1.810.440
3ewkFADSensory box histidine kinase/response regulator/0.440