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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3w5uFADFerredoxin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3w5uFADFerredoxin/1.000
1gaqFADFerredoxin/0.601
4y9uFADNADPH--cytochrome P450 reductase/0.511
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.505
4y7cFADNADPH--cytochrome P450 reductase/0.498
2bpoFADNADPH--cytochrome P450 reductase/0.488
1tllFADNitric oxide synthase, brain1.14.13.390.485
3vo2FADFerredoxin--NADP reductase/0.483
4c43FADFerredoxin--NADP reductase1.18.1.20.481
1gawFADFerredoxin/0.480
3qe2FADNADPH--cytochrome P450 reductase/0.478
3qfsFADNADPH--cytochrome P450 reductase/0.478
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.477
1gjrFADFerredoxin--NADP reductase1.18.1.20.476
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.474
3ojxFADNADPH--cytochrome P450 reductase/0.474
2bf4FADNADPH--cytochrome P450 reductase/0.472
4yafFADNADPH--cytochrome P450 reductase/0.472
1qgyFADFerredoxin--NADP reductase1.18.1.20.469
1bjkFADFerredoxin--NADP reductase1.18.1.20.466
1ja1FADNADPH--cytochrome P450 reductase/0.465
1gvhFADFlavohemoprotein/0.463
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.460
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.456
3zc3FADFerredoxin--NADP reductase1.18.1.20.456
2rc6FADFerredoxin--NADP reductase/0.455
1h85FADFerredoxin--NADP reductase1.18.1.20.454
3qfcFADNADPH--cytochrome P450 reductase/0.454
1qh0FADFerredoxin--NADP reductase1.18.1.20.453
1sm4FADFerredoxin--NADP reductase/0.452
4frkDWDBeta-secretase 13.4.23.460.452
1e64FADFerredoxin--NADP reductase1.18.1.20.451
3fpkFADFerredoxin-NADP reductase/0.448
1amoFADNADPH--cytochrome P450 reductase/0.447
1ewyFADFerredoxin--NADP reductase1.18.1.20.447
1w35FADFerredoxin--NADP reductase1.18.1.20.447
4b722FBBeta-secretase 13.4.23.460.447
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.443
1go2FADFerredoxin--NADP reductase1.18.1.20.442
1ndzFR5Adenosine deaminase3.5.4.40.441
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.441
2b5oFADFerredoxin--NADP reductase1.18.1.20.441
4acuQN7Beta-secretase 13.4.23.460.441
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.441
4b65FADL-ornithine N(5)-monooxygenase/0.441