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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3w2eFADNADH-cytochrome b5 reductase 31.6.2.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3w2eFADNADH-cytochrome b5 reductase 31.6.2.21.000
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.456
3oafOAGDihydrofolate reductase1.5.1.30.451
2w3aTOPDihydrofolate reductase1.5.1.30.444
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
3cgtBCDCyclomaltodextrin glucanotransferase2.4.1.190.443
3nxvD2FDihydrofolate reductase1.5.1.30.442
3w2fFADNADH-cytochrome b5 reductase 31.6.2.20.442
2r86ATP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase/0.440
5c1gGDUHisto-blood group ABO system transferase/0.440