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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vy2FMNFMN-binding protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vy2FMNFMN-binding protein/1.000
3a6rFMNFMN-binding protein/0.669
3awhFMNFMN-binding protein/0.665
3a6qFMNFMN-binding protein/0.641
2e83FMNFMN-binding protein/0.636
3a20FMNFMN-binding protein/0.632
3amfFMNFMN-binding protein/0.627
1flmFMNFMN-binding protein/0.613
3vy5FMNFMN-binding protein/0.575
1wlkFMNFMN-binding protein/0.533
1wliFMNFMN-binding protein/0.512
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.458
1dgmADNAdenosine kinase2.7.1.200.450
1w6hTITPlasmepsin-23.4.23.390.447
1xe55FEPlasmepsin-23.4.23.390.440