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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vw9HPJLactoylglutathione lyase4.4.1.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vw9HPJLactoylglutathione lyase4.4.1.51.000
1qipGNBLactoylglutathione lyase4.4.1.50.578
3w0uHPWLactoylglutathione lyase4.4.1.50.559
3w0tHPULactoylglutathione lyase4.4.1.50.546
1froGSBLactoylglutathione lyase4.4.1.50.541
2za0MGILactoylglutathione lyase4.4.1.50.524
1bh5GTXLactoylglutathione lyase4.4.1.50.523
1qinGIPLactoylglutathione lyase4.4.1.50.501
4kyhZSTLactoylglutathione lyase4.4.1.50.470
4kykIMNLactoylglutathione lyase4.4.1.50.462
3rpnGTXGlutathione S-transferase kappa 12.5.1.180.454
3t8xT8XT-cell surface glycoprotein CD1b/0.451
4pv5CBWLactoylglutathione lyase4.4.1.50.446
4qa1B3NHistone deacetylase 83.5.1.980.441