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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vtcTK3Vitamin D3 receptor

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vtcTK3Vitamin D3 receptor/1.000
3vtbTKAVitamin D3 receptor/0.621
4g1z0VPVitamin D3 receptor A/0.621
3vrvYSDVitamin D3 receptor/0.607
4fhh0U3Vitamin D3 receptor A/0.605
4ia3BIVVitamin D3 receptor A/0.605
2o4rVD5Vitamin D3 receptor/0.602
4g210VPVitamin D3 receptor A/0.601
2zl9VDAVitamin D3 receptor/0.599
3vtdTKDVitamin D3 receptor/0.596
4g1d0VKVitamin D3 receptor A/0.596
1txiTX5Vitamin D3 receptor/0.595
3vruYS3Vitamin D3 receptor/0.592
1s19MC9Vitamin D3 receptor/0.591
2hcdBIVVitamin D3 receptor A/0.591
4g20484Vitamin D3 receptor A/0.588
1rk3VDXVitamin D3 receptor/0.586
1rkgVD1Vitamin D3 receptor/0.586
3kpzZNEVitamin D3 receptor/0.586
3w0jT08Vitamin D3 receptor/0.585
3vt65YIVitamin D3 receptor/0.582
4ia7BIVVitamin D3 receptor A/0.581
4ruoBIVVitamin D3 receptor A/0.581
4rupH97Vitamin D3 receptor A/0.581
3vt5YI2Vitamin D3 receptor/0.580
1rkhVD2Vitamin D3 receptor/0.576
4fhi0S4Vitamin D3 receptor A/0.576
4ia2BIVVitamin D3 receptor A/0.576
2harOCCVitamin D3 receptor/0.575
2hb7O1CVitamin D3 receptor/0.573
2zlaVDBVitamin D3 receptor/0.572
2hasC3OVitamin D3 receptor/0.571
2zlcVDXVitamin D3 receptor/0.571
3vrwYS5Vitamin D3 receptor/0.570
2hb8MVDVitamin D3 receptor/0.569
2hc4VDXVitamin D3 receptor A/0.569
4ia1BIVVitamin D3 receptor A/0.569
3vt3VDXVitamin D3 receptor/0.567
4itfTFYVitamin D3 receptor/0.565
2hbhXE4Vitamin D3 receptor A/0.564
4g1y0VOVitamin D3 receptor A/0.564
2o4jVD4Vitamin D3 receptor/0.563
4rujVDXVitamin D3 receptor A/0.563
1db1VDXVitamin D3 receptor/0.562
4q0a4OAVitamin D3 receptor A/0.561
3dr1C5DVitamin D3 receptor A/0.558
4iteTEYVitamin D3 receptor/0.558
1ie8KH1Vitamin D3 receptor/0.555
2hamC33Vitamin D3 receptor/0.555
3w5q3KLVitamin D3 receptor/0.555
3a783EVVitamin D3 receptor/0.554
3w0aDS5Vitamin D3 receptor/0.554
3vrtYS2Vitamin D3 receptor/0.553
3w0hW12Vitamin D3 receptor/0.553
3w5p4OAVitamin D3 receptor/0.553
3w5rLOAVitamin D3 receptor/0.551
1ie9VDXVitamin D3 receptor/0.550
1rjkVDZVitamin D3 receptor/0.546
4g2h0VQVitamin D3 receptor A/0.546
3vt8YI3Vitamin D3 receptor/0.544
3vt9YI4Vitamin D3 receptor/0.542
3w0iO11Vitamin D3 receptor/0.538
3w0gW07Vitamin D3 receptor/0.536
3w5tLHPVitamin D3 receptor/0.535
3w0yDS4Vitamin D3 receptor/0.534
1s0zEB1Vitamin D3 receptor/0.533
3vt45YIVitamin D3 receptor/0.531
3vt7VDXVitamin D3 receptor/0.531
3m7rVDXVitamin D3 receptor/0.526
3w0c6DSVitamin D3 receptor/0.522
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446