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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vkjFNRIsopentenyl-diphosphate delta-isomerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vkjFNRIsopentenyl-diphosphate delta-isomerase/1.000
3b03VNRIsopentenyl-diphosphate delta-isomerase/0.587
2zrvFNRIsopentenyl-diphosphate delta-isomerase/0.551
3b04OOPIsopentenyl-diphosphate delta-isomerase/0.551
2zryFNRIsopentenyl-diphosphate delta-isomerase/0.537
2zruFMNIsopentenyl-diphosphate delta-isomerase/0.532
2zrzFNRIsopentenyl-diphosphate delta-isomerase/0.532
3b05FNRIsopentenyl-diphosphate delta-isomerase/0.527
2zrxFMNIsopentenyl-diphosphate delta-isomerase/0.505
3dh7FMNIsopentenyl-diphosphate delta-isomerase/0.484
5a4vQUEGlutathione S-transferase F22.5.1.180.459
4frkDWDBeta-secretase 13.4.23.460.452
3veu0GOBeta-secretase 13.4.23.460.447
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.447
5dp2NAPCurF/0.447
4dh60KNBeta-secretase 13.4.23.460.445
4e2yJHZMethyltransferase/0.444
4h3i10VBeta-secretase 13.4.23.460.443