Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vgwNVZAvidin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vgwNVZAvidin/1.000
3vhmNPKAvidin/0.582
3vhhVHHAvidin/0.516
2aviBTNAvidin/0.507
1avdBTNAvidin/0.491
2fhnBNIAvidin-related protein 4/5/0.477
3wznBTNStreptavidin/0.467
1swnBTNStreptavidin/0.464
4bj8BTNAvidin/0.462
2fhlBNIAvidin-related protein 4/5/0.459
2uz2BTNAvd protein/0.459
2dteNAIGlucose 1-dehydrogenase related protein/0.455
2uywBTNAvd protein/0.453
2c4iBTNAvidin/0.450
4bx7B4FStreptavidin/0.450
1mepBTNStreptavidin/0.449
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.448
2zscBTNTamavidin2/0.446
2v6gNAP3-oxo-Delta(4,5)-steroid 5-beta-reductase/0.445
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.442
4j7xNAPSepiapterin reductase1.1.1.1530.440