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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vcyUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vcyUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/1.000
2rl1UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.617
4r7uUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.603
3swqEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.600
1rywEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.590
3issEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.587
3v4tUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.583
1q3gUDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.572
2yvwEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.548
3upkUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.540
3kqjUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.539
1a2nTETUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.523
2rl2UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.523
3kr6UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.514
1uaeUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.510
3lthUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.505