Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
3v9l | NAD | Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial | 1.2.1.88 |
PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
---|---|---|---|---|---|
3v9l | NAD | Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial | 1.2.1.88 | 1.000 | |
3ju8 | NAD | N-succinylglutamate 5-semialdehyde dehydrogenase | 1.2.1.71 | 0.515 | |
4ihi | NAD | Probable pyrroline-5-carboxylate dehydrogenase RocA | / | 0.503 | |
3haz | NAD | Bifunctional protein PutA | / | 0.492 | |
4i1w | NAD | 2-aminomuconate 6-semialdehyde dehydrogenase | / | 0.471 | |
3lns | NAP | NAD(P)-dependent benzaldehyde dehydrogenase | 1.2.1.28 | 0.469 | |
1uxn | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.463 | |
4zz7 | NAD | Methylmalonate-semialdehyde dehydrogenase | / | 0.450 | |
3rhh | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.448 | |
5eyu | NAD | Betaine-aldehyde dehydrogenase | / | 0.442 |