scPDB - Distribution of Binding site Similarity values of 3v8v entry / Site 4

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3v8v	SAM	Ribosomal RNA large subunit methyltransferase K/L	2.1.1.173

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3v8v	SAM	Ribosomal RNA large subunit methyltransferase K/L	2.1.1.173	1.000
3v97	SAH	Ribosomal RNA large subunit methyltransferase K/L	2.1.1.173	0.625
3ldf	SAH	Uncharacterized protein	/	0.502
4dmg	SAM	Uncharacterized protein	/	0.450
4pyo	SAH	Catechol O-methyltransferase	2.1.1.6	0.442
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.442