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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.742
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.692
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.660
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.657
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.625
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.622
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.620
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.613
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.610
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.605
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.602
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.592
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.591
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.587
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.586
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.579
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.575
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.564
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.563
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.547
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.540
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.534
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.531
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.526
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.521
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.520
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.515
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.472
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.468
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.466
4pkl1GHUncharacterized protein/0.458
4e4qRRHPeroxisome proliferator-activated receptor gamma/0.456
2bktRPFRenin3.4.23.150.453
2ojg19AMitogen-activated protein kinase 12.7.11.240.451
1k7fIAVTryptophan synthase alpha chain/0.450
1s7gNADNAD-dependent protein deacylase 2/0.450
4a4wYFBPeroxisome proliferator-activated receptor gamma/0.449
3k1wBFXRenin3.4.23.150.447
3g70A5TRenin3.4.23.150.446
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.446
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.443
2vqoTFGHistone deacetylase 43.5.1.980.441
4em9TCEPeroxisome proliferator-activated receptor gamma/0.441
5f54TMPSingle-stranded-DNA-specific exonuclease/0.441
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.440