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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.160

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1601.000
3uoxFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.540
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.531
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.529
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.526
2ylxFADPhenylacetone monooxygenase1.14.13.920.489
2ylrFADPhenylacetone monooxygenase1.14.13.920.488
4aosFADSteroid monooxygenase/0.486
2ym2FADPhenylacetone monooxygenase1.14.13.920.485
2ylsFADPhenylacetone monooxygenase1.14.13.920.476
1w4xFADPhenylacetone monooxygenase1.14.13.920.466
4ap3FADSteroid monooxygenase/0.466
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.464
2ylzFADPhenylacetone monooxygenase1.14.13.920.463
4aoxFADSteroid monooxygenase/0.462
5dp2NAPCurF/0.462
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.455
4egbNADdTDP-glucose 4,6-dehydratase/0.455
3c212BADNA integrity scanning protein DisA/0.452
3uovFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.452
5kczNAJAlcohol dehydrogenase E chain1.1.1.10.451
3lqfNADGalactitol dehydrogenase/0.448
1bdbNADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase/0.447
2ylrNAPPhenylacetone monooxygenase1.14.13.920.446
5kjcNAJAlcohol dehydrogenase E chain1.1.1.10.444
2igoFADPyranose 2-oxidase/0.443
3c1y2BADNA integrity scanning protein DisA/0.442
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.442
4xguADPPutative pachytene checkpoint protein 2/0.441
1fm4DXCMajor pollen allergen Bet v 1-L/0.440
2q0lFADThioredoxin reductase1.8.1.90.440
3djjFADGlutathione reductase, mitochondrial1.8.1.70.440
3toxNAPPutative oxidoreductase/0.440
4c77N01Phenylacetone monooxygenase1.14.13.920.440
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.440