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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3u9dATPActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3u9dATPActin, alpha skeletal muscle/1.000
3m6gATPActin, alpha skeletal muscle/0.594
1h1vATPActin, alpha skeletal muscle/0.578
4k42ADPActin, alpha skeletal muscle/0.575
3ffkATPActin, alpha skeletal muscle/0.573
5ce3ATPActin/0.569
3mn6ATPActin-5C/0.564
2q36ATPActin, alpha skeletal muscle/0.560
4jhdANPActin-5C/0.557
1ijjATPActin, alpha skeletal muscle/0.550
1t44ATPActin, alpha skeletal muscle/0.550
1lotATPActin, alpha skeletal muscle/0.547
4pkgATPActin, alpha skeletal muscle/0.543
1s22ATPActin, alpha skeletal muscle/0.541
4pl8ATPActin, alpha skeletal muscle/0.540
3tu5ATPActin, alpha skeletal muscle/0.539
3el2ATPActin-5C/0.538
4cbxATPActin-2/0.538
1rgiATPActin, alpha skeletal muscle/0.533
1nmdATPMajor actin/0.529
4m63ATPActin-5C/0.527
4pkhADPActin, alpha skeletal muscle/0.526
4k43ADPActin, alpha skeletal muscle/0.520
3a5mATPMajor actin/0.518
3mn9ATPActin-5C/0.517
1eqyATPActin, alpha skeletal muscle/0.513
3mn7ATPActin-5C/0.511
2v51ATPActin, alpha skeletal muscle/0.510
3dawATPActin, alpha skeletal muscle/0.510
1c0fATPMajor actin/0.509
3m1fATPActin, alpha skeletal muscle/0.509
4pkiATPActin, alpha skeletal muscle/0.509
1mduATPActin, alpha skeletal muscle/0.507
1yxqATPActin, alpha skeletal muscle/0.506
1qz5ATPActin, alpha skeletal muscle/0.504
3w3dATPActin, gamma-enteric smooth muscle/0.503
4rwtANPActin-5C/0.500
2p9kATPActin-related protein 2/0.497
1nm1ATPMajor actin/0.494
3u4lATPActin, cytoplasmic 1/0.491
4ci6ATPActin/0.491
4k41ATPActin, alpha skeletal muscle/0.491
1kxpATPActin, alpha skeletal muscle/0.482
2a41ATPActin, alpha skeletal muscle/0.459
1dejATPMajor actin/0.455
2q97ATPActin, alpha skeletal muscle/0.454
3a5oATPMajor actin/0.448
2oanATPActin, cytoplasmic 1/0.442