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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3u4o08EGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3u4o08EGenome polyprotein2.7.7.481.000
3uph0C1Genome polyprotein2.7.7.480.707
3tyvHI3Genome polyprotein2.7.7.480.673
3ska053Genome polyprotein2.7.7.480.626
2yoj8Y6Genome polyprotein2.7.7.480.601
4mkb28VGenome polyprotein2.7.7.480.599
3u4r08FGenome polyprotein2.7.7.480.593
3ske054Genome polyprotein2.7.7.480.592
3hkyIX6Genome polyprotein2.7.7.480.589
3bsc2PDGenome polyprotein2.7.7.480.583
4mka2AYGenome polyprotein2.7.7.480.579
4mk928RGenome polyprotein2.7.7.480.574
3igvB80Genome polyprotein2.7.7.480.568
3h59H59Genome polyprotein2.7.7.480.562
3g86T18Genome polyprotein2.7.7.480.560
2giqNN2Genome polyprotein2.7.7.480.555
3csoXNIGenome polyprotein2.7.7.480.554
3gnvXNZGenome polyprotein2.7.7.480.546
3d28B34Genome polyprotein2.7.7.480.545
2gc8885Polyprotein/0.541
4mk728OGenome polyprotein2.7.7.480.541
3d5m4MSGenome polyprotein2.7.7.480.540
3hkwIX6Genome polyprotein2.7.7.480.535
4ih61EPGenome polyprotein2.7.7.480.531
3gynB42Genome polyprotein2.7.7.480.528
3br9DEYGenome polyprotein2.7.7.480.523
4eaw0NQGenome polyprotein2.7.7.480.509
4iz02BIGenome polyprotein2.7.7.480.499
3golXNDGenome polyprotein2.7.7.480.498
3h2lYAKGenome polyprotein2.7.7.480.498
3h5uH5UGenome polyprotein2.7.7.480.484
3bsa1PDGenome polyprotein2.7.7.480.482
3gnwXNCGenome polyprotein2.7.7.480.475
3upi0C2Genome polyprotein2.7.7.480.475
3cdeN3HGenome polyprotein2.7.7.480.459
3co93MSGenome polyprotein2.7.7.480.459
1z4uPH9Polyprotein/0.450
2fvc888Polyprotein/0.449
3e51N35Genome polyprotein2.7.7.480.448
3h5sH5SGenome polyprotein2.7.7.480.442
4mk828QGenome polyprotein2.7.7.480.442