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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3u2xASOGlycogenin-12.4.1.186

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3u2xASOGlycogenin-12.4.1.1861.000
3t7oUPGGlycogenin-12.4.1.1860.648
3rmwUPGGlycogenin-12.4.1.1860.484
2vkdUPGCytotoxin L/0.465
1zdgUPGGlycogenin-12.4.1.1860.454
4y6nUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.449
5j4eFMNSensory box protein/0.448
2j7t274Serine/threonine-protein kinase 102.7.11.10.446
3srzUPGToxin A/0.445
4y9xUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.442
1gx1CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4.6.1.120.441