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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3tu5ATPActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3tu5ATPActin, alpha skeletal muscle/1.000
1t44ATPActin, alpha skeletal muscle/0.601
3m6gATPActin, alpha skeletal muscle/0.586
1h1vATPActin, alpha skeletal muscle/0.585
4pkgATPActin, alpha skeletal muscle/0.578
1rgiATPActin, alpha skeletal muscle/0.573
1s22ATPActin, alpha skeletal muscle/0.570
4k42ADPActin, alpha skeletal muscle/0.569
1eqyATPActin, alpha skeletal muscle/0.561
1lotATPActin, alpha skeletal muscle/0.556
1qz5ATPActin, alpha skeletal muscle/0.550
3el2ATPActin-5C/0.550
2q36ATPActin, alpha skeletal muscle/0.546
3mn6ATPActin-5C/0.545
4ci6ATPActin/0.544
4cbxATPActin-2/0.541
4pl8ATPActin, alpha skeletal muscle/0.538
1ijjATPActin, alpha skeletal muscle/0.536
5ce3ATPActin/0.536
1mduATPActin, alpha skeletal muscle/0.534
1nmdATPMajor actin/0.534
3ffkATPActin, alpha skeletal muscle/0.532
1c0fATPMajor actin/0.529
4k41ATPActin, alpha skeletal muscle/0.529
3mn9ATPActin-5C/0.525
3u9dATPActin, alpha skeletal muscle/0.523
4pkhADPActin, alpha skeletal muscle/0.521
2v51ATPActin, alpha skeletal muscle/0.520
3m1fATPActin, alpha skeletal muscle/0.520
1kxpATPActin, alpha skeletal muscle/0.518
4pkiATPActin, alpha skeletal muscle/0.517
3dawATPActin, alpha skeletal muscle/0.510
4jhdANPActin-5C/0.509
1yxqATPActin, alpha skeletal muscle/0.508
3mn7ATPActin-5C/0.507
3eksATPActin-5C/0.506
3u4lATPActin, cytoplasmic 1/0.506
3a5mATPMajor actin/0.505
4k43ADPActin, alpha skeletal muscle/0.502
4m63ATPActin-5C/0.495
1nm1ATPMajor actin/0.491
4rwtANPActin-5C/0.490
2q97ATPActin, alpha skeletal muscle/0.483
3w3dATPActin, gamma-enteric smooth muscle/0.476
2p9kATPActin-related protein 2/0.467
2oanATPActin, cytoplasmic 1/0.459
2a41ATPActin, alpha skeletal muscle/0.454
3a5oATPMajor actin/0.452
3ekuATPActin-5C/0.449
1dejATPMajor actin/0.446
1nlvATPMajor actin/0.441