scPDB - Distribution of Binding site Similarity values of 3tm4 entry / Site 2

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3tm4	SAM	Uncharacterized protein

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3tm4	SAM	Uncharacterized protein	/	1.000
3tm5	SFG	Uncharacterized protein	/	0.634
3tlj	SAH	Uncharacterized protein	/	0.624
3fri	SAH	16S rRNA methylase	/	0.495
4fr0	SAM	Arsenic methyltransferase	/	0.469
3w1w	CHD	Ferrochelatase, mitochondrial	4.99.1.1	0.468
10mh	SAH	Modification methylase HhaI	2.1.1.37	0.459
3ldg	SAH	Uncharacterized protein	/	0.457
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.450
1q20	PLO	Sulfotransferase family cytosolic 2B member 1	2.8.2.2	0.448
1iyz	NDP	Probable quinone oxidoreductase	/	0.446
5mht	SAH	Modification methylase HhaI	2.1.1.37	0.446
1aj8	COA	Citrate synthase	/	0.444
3nlq	JRR	Nitric oxide synthase, brain	1.14.13.39	0.444
4imw	1EV	Nitric oxide synthase, brain	1.14.13.39	0.444
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.443
2upj	U02	Gag-Pol polyprotein	3.4.23.16	0.443
2wle	COA	Polysialic acid O-acetyltransferase	/	0.443
3nlj	JRR	Nitric oxide synthase, brain	1.14.13.39	0.443
3swr	SFG	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.443
1boo	SAH	Modification methylase PvuII	2.1.1.113	0.441
2hs1	017	Protease	/	0.441