sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3t87 | UBZ | Thermolysin | 3.4.24.27 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3t87 | UBZ | Thermolysin | 3.4.24.27 | 1.000 | |
| 3t8c | UBW | Thermolysin | 3.4.24.27 | 0.893 | |
| 4d9w | X32 | Thermolysin | 3.4.24.27 | 0.866 | |
| 4h57 | 0PJ | Thermolysin | 3.4.24.27 | 0.662 | |
| 3t8d | UBV | Thermolysin | 3.4.24.27 | 0.641 | |
| 6tmn | 0PI | Thermolysin | 3.4.24.27 | 0.639 | |
| 3t74 | UBY | Thermolysin | 3.4.24.27 | 0.627 | |
| 3t8h | UBS | Thermolysin | 3.4.24.27 | 0.627 | |
| 4tmn | 0PK | Thermolysin | 3.4.24.27 | 0.624 | |
| 2tmn | 0FA | Thermolysin | 3.4.24.27 | 0.601 | |
| 1qf2 | TI3 | Thermolysin | 3.4.24.27 | 0.575 | |
| 4tln | LNO | Thermolysin | 3.4.24.27 | 0.570 | |
| 4b52 | RDF | Bacillolysin | / | 0.563 | |
| 3fgd | BYA | Thermolysin | 3.4.24.27 | 0.555 | |
| 3for | ZNP | Thermolysin | 3.4.24.27 | 0.532 | |
| 4ara | C56 | Acetylcholinesterase | 3.1.1.7 | 0.480 | |
| 1q84 | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.460 | |
| 3f28 | S7B | Thermolysin | 3.4.24.27 | 0.458 | |
| 4zr5 | RDF | Neprilysin | / | 0.458 | |
| 2q2v | NAD | Beta-D-hydroxybutyrate dehydrogenase | / | 0.456 | |
| 1k4m | NAD | Nicotinate-nucleotide adenylyltransferase | 2.7.7.18 | 0.450 | |
| 2hpv | FMN | FMN-dependent NADH-azoreductase | 1.7 | 0.449 | |
| 3f2p | S3B | Thermolysin | 3.4.24.27 | 0.449 | |
| 4gyy | 12V | UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit | / | 0.448 | |
| 1x1b | SAH | C-20 methyltransferase | / | 0.447 | |
| 3h2s | NDP | Putative NADH-flavin reductase | / | 0.447 | |
| 3mp3 | HGG | Hydroxymethylglutaryl-CoA lyase, mitochondrial | 4.1.3.4 | 0.445 | |
| 4ca5 | 3EF | Angiotensin-converting enzyme | 3.2.1 | 0.444 | |
| 2ztm | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.443 | |
| 2ztl | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.442 | |
| 4bxk | 1IU | Angiotensin-converting enzyme | 3.2.1 | 0.442 | |
| 4rsl | FAD | Fructosyl peptide oxidase | / | 0.441 | |
| 2get | COK | Pantothenate kinase | 2.7.1.33 | 0.440 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.440 |