Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3t3fN5PDNA polymerase I, thermostable2.7.7.7

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3t3fN5PDNA polymerase I, thermostable2.7.7.71.000
4dfk0L5DNA polymerase I, thermostable2.7.7.70.556
1qssDG3DNA polymerase I, thermostable2.7.7.70.546
1qtmTTPDNA polymerase I, thermostable2.7.7.70.544
1qsyDDSDNA polymerase I, thermostable2.7.7.70.486
4df80L4DNA polymerase I, thermostable2.7.7.70.470
4df40L3DNA polymerase I, thermostable2.7.7.70.465