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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3t195MAGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3t195MAGag-Pol polyprotein2.7.7.491.000
3tamM06Gag-Pol polyprotein2.7.7.490.699
3t1a5MAGag-Pol polyprotein2.7.7.490.694
3c6uM22Gag-Pol polyprotein2.7.7.490.633
3lakKR1Gag-Pol polyprotein2.7.7.490.631
3dyaPZLGag-Pol polyprotein2.7.7.490.626
4h4m494Gag-Pol polyprotein2.7.7.490.620
3drpR8EGag-Pol polyprotein2.7.7.490.618
2ynfWHUGag-Pol polyprotein2.7.7.490.601
3dokGWJPol protein/0.601
4h4o506Gag-Pol polyprotein2.7.7.490.601
3c6tM14Gag-Pol polyprotein2.7.7.490.587
3dlgGWEGag-Pol polyprotein2.7.7.490.579
4rw6494Gag-Pol polyprotein2.7.7.490.575
4mfb29TGag-Pol polyprotein2.7.7.490.573
3drrR8EGag-Pol polyprotein2.7.7.490.571
2ynhEURGag-Pol polyprotein2.7.7.490.569
3dmjGWEPol protein/0.567
3lalKRVGag-Pol polyprotein2.7.7.490.564
4rw4494Gag-Pol polyprotein2.7.7.490.561
3e01PZ2Gag-Pol polyprotein2.7.7.490.559
2be2R22Gag-Pol polyprotein2.7.7.490.549
3ffi3OBGag-Pol polyprotein2.7.7.490.542
1c1bGCAGag-Pol polyprotein2.7.7.490.525
2wonZZEGag-Pol polyprotein2.7.7.490.524
1rtiHEFGag-Pol polyprotein2.7.7.490.522
4lsl1YQGag-Pol polyprotein2.7.7.490.522
2b5j3ACGag-Pol polyprotein2.7.7.490.512
3dolGWIPol protein/0.511
3dleGFAGag-Pol polyprotein2.7.7.490.509
1klmSPPGag-Pol polyprotein2.7.7.490.501
2jleI15Reverse transcriptase/RNaseH/0.500
3lanKBTGag-Pol polyprotein2.7.7.490.500
1jlaTNKGag-Pol polyprotein2.7.7.490.498
3is9AC7Gag-Pol polyprotein2.7.7.490.496
1rt1MKCGag-Pol polyprotein2.7.7.490.484
1rt2TNKGag-Pol polyprotein2.7.7.490.482
3di6PDZGag-Pol polyprotein2.7.7.490.478
1s1vTNKGag-Pol polyprotein2.7.7.490.475
3i0rRT3Gag-Pol polyprotein2.7.7.490.463
3nbpJGZGag-Pol polyprotein2.7.7.490.463
4i7fNVEGag-Pol polyprotein2.7.7.490.460
3m8qDJZGag-Pol polyprotein2.7.7.490.459
1ep4S11Gag-Pol polyprotein2.7.7.490.457
1c1c612Gag-Pol polyprotein2.7.7.490.443
4ib4ERM5-hydroxytryptamine receptor 2B/0.442