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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3t0kDCQSulfide-quinone reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3t0kDCQSulfide-quinone reductase/1.000
3szfDCQSulfide-quinone reductase/0.565
3t31DCQSulfide-quinone reductase/0.563
3u9fCLMChloramphenicol acetyltransferase2.3.1.280.470
2f3815MAldo-keto reductase family 1 member C3/0.469
3p9tTCLRepressor/0.459
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.454
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.453
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.453
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.451
3l6jZ90Alr2278 protein/0.450
1ry8RUTAldo-keto reductase family 1 member C3/0.449
4jlm1NNDeoxycytidine kinase2.7.1.740.448
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.446
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
4bfxZVXPantothenate kinase2.7.1.330.444
3f3y4OABile salt sulfotransferase2.8.2.140.443
1pqc444Oxysterols receptor LXR-beta/0.440
2wjoQUDBeta-secretase 13.4.23.460.440