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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3slfACOAminoglycoside N3-acetyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3slfACOAminoglycoside N3-acetyltransferase/1.000
1kevNDPNADP-dependent isopropanol dehydrogenase1.1.1.800.466
3a4vNADNDP-sugar epimerase/0.459
5a1tNAIL-lactate dehydrogenase/0.458
3d3wNAPL-xylulose reductase1.1.1.100.453
4lcjNADC-terminal-binding protein 2/0.453
1s20NAD2,3-diketo-L-gulonate reductase1.1.1.1300.452
2y05NAPProstaglandin reductase 1/0.452
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.448
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.445
1cdoNADAlcohol dehydrogenase 11.1.1.10.443
1axeNADAlcohol dehydrogenase E chain1.1.1.10.441