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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ske054Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ske054Genome polyprotein2.7.7.481.000
3ska053Genome polyprotein2.7.7.480.746
3gnvXNZGenome polyprotein2.7.7.480.642
3u4o08EGenome polyprotein2.7.7.480.627
3upi0C2Genome polyprotein2.7.7.480.620
3tyvHI3Genome polyprotein2.7.7.480.618
2yoj8Y6Genome polyprotein2.7.7.480.598
3uph0C1Genome polyprotein2.7.7.480.595
3u4r08FGenome polyprotein2.7.7.480.574
3h59H59Genome polyprotein2.7.7.480.563
3igvB80Genome polyprotein2.7.7.480.561
3hkyIX6Genome polyprotein2.7.7.480.559
4mka2AYGenome polyprotein2.7.7.480.556
3hkwIX6Genome polyprotein2.7.7.480.553
4mkb28VGenome polyprotein2.7.7.480.549
3d5m4MSGenome polyprotein2.7.7.480.545
4mk928RGenome polyprotein2.7.7.480.544
3d28B34Genome polyprotein2.7.7.480.538
2gc8885Polyprotein/0.537
3csoXNIGenome polyprotein2.7.7.480.537
3g86T18Genome polyprotein2.7.7.480.537
3bsc2PDGenome polyprotein2.7.7.480.536
4iz02BIGenome polyprotein2.7.7.480.536
3br9DEYGenome polyprotein2.7.7.480.529
2giqNN2Genome polyprotein2.7.7.480.523
4ih71ERGenome polyprotein2.7.7.480.522
3h2lYAKGenome polyprotein2.7.7.480.521
4eaw0NQGenome polyprotein2.7.7.480.517
4ih61EPGenome polyprotein2.7.7.480.516
3gynB42Genome polyprotein2.7.7.480.507
4mk728OGenome polyprotein2.7.7.480.495
1z4uPH9Polyprotein/0.491
1yvfPH7Polyprotein/0.488
3h5uH5UGenome polyprotein2.7.7.480.483
3golXNDGenome polyprotein2.7.7.480.470
3bsa1PDGenome polyprotein2.7.7.480.466
3co93MSGenome polyprotein2.7.7.480.465
3gnwXNCGenome polyprotein2.7.7.480.464
3h5sH5SGenome polyprotein2.7.7.480.461
3cvkN34Genome polyprotein2.7.7.480.458
3e51N35Genome polyprotein2.7.7.480.457
2fvc888Polyprotein/0.442