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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ska053Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ska053Genome polyprotein2.7.7.481.000
3ske054Genome polyprotein2.7.7.480.715
3upi0C2Genome polyprotein2.7.7.480.653
3u4o08EGenome polyprotein2.7.7.480.638
3tyvHI3Genome polyprotein2.7.7.480.613
3uph0C1Genome polyprotein2.7.7.480.590
3u4r08FGenome polyprotein2.7.7.480.585
4mkb28VGenome polyprotein2.7.7.480.579
3g86T18Genome polyprotein2.7.7.480.570
4mka2AYGenome polyprotein2.7.7.480.570
4mk928RGenome polyprotein2.7.7.480.560
3igvB80Genome polyprotein2.7.7.480.557
3d5m4MSGenome polyprotein2.7.7.480.556
4iz02BIGenome polyprotein2.7.7.480.556
3h59H59Genome polyprotein2.7.7.480.554
3d28B34Genome polyprotein2.7.7.480.553
3gnvXNZGenome polyprotein2.7.7.480.553
2yoj8Y6Genome polyprotein2.7.7.480.549
3hkyIX6Genome polyprotein2.7.7.480.544
4eaw0NQGenome polyprotein2.7.7.480.541
2gc8885Polyprotein/0.540
2giqNN2Genome polyprotein2.7.7.480.537
3br9DEYGenome polyprotein2.7.7.480.537
3bsc2PDGenome polyprotein2.7.7.480.537
3csoXNIGenome polyprotein2.7.7.480.530
3hkwIX6Genome polyprotein2.7.7.480.528
3h2lYAKGenome polyprotein2.7.7.480.523
3gynB42Genome polyprotein2.7.7.480.519
4ih61EPGenome polyprotein2.7.7.480.518
4mk728OGenome polyprotein2.7.7.480.507
4ih71ERGenome polyprotein2.7.7.480.497
4mk828QGenome polyprotein2.7.7.480.489
3bsa1PDGenome polyprotein2.7.7.480.485
3h5uH5UGenome polyprotein2.7.7.480.476
3golXNDGenome polyprotein2.7.7.480.465
3cdeN3HGenome polyprotein2.7.7.480.464
3co93MSGenome polyprotein2.7.7.480.463
3gnwXNCGenome polyprotein2.7.7.480.460
1z4uPH9Polyprotein/0.459
2fvc888Polyprotein/0.453
3e51N35Genome polyprotein2.7.7.480.449
3cvkN34Genome polyprotein2.7.7.480.446
3h5sH5SGenome polyprotein2.7.7.480.445