Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3sfeFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3sfeFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/1.000
4kx6FADFumarate reductase flavoprotein subunit1.3.5.40.547
4ytnFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.545
5c2tFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.543
5c3jFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.543
1kf6FADFumarate reductase flavoprotein subunit1.3.5.40.536
1knrFADL-aspartate oxidase1.4.3.160.469
1d4dFADFumarate reductase flavoprotein subunit1.3.5.40.461
1d4cFADFumarate reductase flavoprotein subunit1.3.5.40.451