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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3s1aATPCircadian clock protein kinase KaiC2.7.11.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3s1aATPCircadian clock protein kinase KaiC2.7.11.11.000
3jzmATPCircadian clock protein kinase KaiC2.7.11.10.544
2gblATPCircadian clock protein kinase KaiC2.7.11.10.540
4tl7ATPCircadian clock protein kinase KaiC2.7.11.10.538
3dvlATPCircadian clock protein kinase KaiC2.7.11.10.537
4tl6ANPCircadian clock protein kinase KaiC2.7.11.10.536
1tf7ATPCircadian clock protein kinase KaiC2.7.11.10.519
4tldAGSCircadian clock protein kinase KaiC2.7.11.10.515
4tl9AGSCircadian clock protein kinase KaiC2.7.11.10.514
1u9iATPCircadian clock protein kinase KaiC2.7.11.10.512
4tleAGSCircadian clock protein kinase KaiC2.7.11.10.512
4tlbAGSCircadian clock protein kinase KaiC2.7.11.10.503
3k0fATPCircadian clock protein kinase KaiC2.7.11.10.494
4tlcAGSCircadian clock protein kinase KaiC2.7.11.10.487
4o0mATPCircadian clock protein kinase KaiC2.7.11.10.474
3k0aATPCircadian clock protein kinase KaiC2.7.11.10.467
4tl8AGSCircadian clock protein kinase KaiC2.7.11.10.464
4tlaADPCircadian clock protein kinase KaiC2.7.11.10.451