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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3rl45GPMetallophosphoesterase MPPED23.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3rl45GPMetallophosphoesterase MPPED23.11.000
3rl35GPMetallophosphoesterase MPPED23.10.501
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.461
4gts7TPGeranylgeranyl transferase type-2 subunit beta2.5.1.600.457
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.455
3c72CX1Geranylgeranyl transferase type-2 subunit beta2.5.1.600.451
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.451
4iarERM5-hydroxytryptamine receptor 1B/0.451
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.449
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.447
1gky5GPGuanylate kinase2.7.4.80.444
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.444
1qjfACSIsopenicillin N synthase1.21.3.10.442
3hxcBD6Geranylgeranyl transferase type-2 subunit beta2.5.1.600.442
2bf7HBIPteridine reductase 11.5.1.330.441
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.440
3hxbBD5Geranylgeranyl transferase type-2 subunit beta2.5.1.600.440