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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3raiX85Cyclin-dependent kinase 22.7.11.22

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3raiX85Cyclin-dependent kinase 22.7.11.221.000
3r6xX84Cyclin-dependent kinase 22.7.11.220.671
3qx2X63Cyclin-dependent kinase 22.7.11.220.665
3qxoX65Cyclin-dependent kinase 22.7.11.220.621
3rm719ZCyclin-dependent kinase 22.7.11.220.603
3roy22ZCyclin-dependent kinase 22.7.11.220.599
3r1qX75Cyclin-dependent kinase 22.7.11.220.550
3r8vZ62Cyclin-dependent kinase 22.7.11.220.550
3r73X87Cyclin-dependent kinase 22.7.11.220.541
3r71X86Cyclin-dependent kinase 22.7.11.220.534
3r28XA0Cyclin-dependent kinase 22.7.11.220.528
1w8cN69Cyclin-dependent kinase 22.7.11.220.527
1pxmCK5Cyclin-dependent kinase 22.7.11.220.524
3qtxX43Cyclin-dependent kinase 22.7.11.220.522
2c69CT8Cyclin-dependent kinase 22.7.11.220.520
3qwkX62Cyclin-dependent kinase 22.7.11.220.520
3qu0X40Cyclin-dependent kinase 22.7.11.220.519
3rahO1ZCyclin-dependent kinase 22.7.11.220.518
3qqfX07Cyclin-dependent kinase 22.7.11.220.517
3qwjX6ACyclin-dependent kinase 22.7.11.220.517
3r83Z14Cyclin-dependent kinase 22.7.11.220.517
3r8lZ30Cyclin-dependent kinase 22.7.11.220.517
3qzgX67Cyclin-dependent kinase 22.7.11.220.511
2w06FRVCyclin-dependent kinase 22.7.11.220.510
2c6o4SPCyclin-dependent kinase 22.7.11.220.506
2r3gSC9Cyclin-dependent kinase 22.7.11.220.506
3qtzX42Cyclin-dependent kinase 22.7.11.220.506
3rpo24ZCyclin-dependent kinase 22.7.11.220.503
3pj8404Cyclin-dependent kinase 22.7.11.220.500
3sqq99ZCyclin-dependent kinase 22.7.11.220.500
1ke6LS2Cyclin-dependent kinase 22.7.11.220.499
2btrU73Cyclin-dependent kinase 22.7.11.220.499
3r9nZ68Cyclin-dependent kinase 22.7.11.220.499
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.497
3qtuX44Cyclin-dependent kinase 22.7.11.220.497
3iggEFQCyclin-dependent kinase 22.7.11.220.496
3s2pPMUCyclin-dependent kinase 22.7.11.220.496
3rpr25ZCyclin-dependent kinase 22.7.11.220.495
3lfnA27Cyclin-dependent kinase 22.7.11.220.494
3r1sX73Cyclin-dependent kinase 22.7.11.220.494
2fvdLIACyclin-dependent kinase 22.7.11.220.493
2r3iSCFCyclin-dependent kinase 22.7.11.220.492
3qzhX69Cyclin-dependent kinase 22.7.11.220.492
3r9hZ67Cyclin-dependent kinase 22.7.11.220.492
1p2a5BNCyclin-dependent kinase 22.7.11.220.491
1g5sI17Cyclin-dependent kinase 22.7.11.220.490
2c6mDT5Cyclin-dependent kinase 22.7.11.220.489
4fkq42KCyclin-dependent kinase 22.7.11.220.489
2r3lSCWCyclin-dependent kinase 22.7.11.220.487
2r3p3SCCyclin-dependent kinase 22.7.11.220.487
3s0o50ZCyclin-dependent kinase 22.7.11.220.487
4erwSTUCyclin-dependent kinase 22.7.11.220.487
2r64740Cyclin-dependent kinase 22.7.11.220.486
3rk708ZCyclin-dependent kinase 22.7.11.220.486
4fko20KCyclin-dependent kinase 22.7.11.220.486
2vtsLZCCyclin-dependent kinase 22.7.11.220.485
2w05FRTCyclin-dependent kinase 22.7.11.220.485
3ig7EFPCyclin-dependent kinase 22.7.11.220.485
3s1h56ZCyclin-dependent kinase 22.7.11.220.485
4kd11QKCyclin-dependent kinase 22.7.11.220.485
1h0w207Cyclin-dependent kinase 22.7.11.220.484
2c6iDT1Cyclin-dependent kinase 22.7.11.220.484
3rpv26ZCyclin-dependent kinase 22.7.11.220.484
2r3r6SCCyclin-dependent kinase 22.7.11.220.483
3rk507ZCyclin-dependent kinase 22.7.11.220.482
3rk909ZCyclin-dependent kinase 22.7.11.220.482
3rm618ZCyclin-dependent kinase 22.7.11.220.482
1h1r6CPCyclin-dependent kinase 22.7.11.220.481
3r7yZ04Cyclin-dependent kinase 22.7.11.220.481
3rak03ZCyclin-dependent kinase 22.7.11.220.481
4ez30S0Cyclin-dependent kinase 22.7.11.220.481
1gz8MBPCyclin-dependent kinase 22.7.11.220.480
3rni21ZCyclin-dependent kinase 22.7.11.220.480
4ek816KCyclin-dependent kinase 22.7.11.220.480
3ti1B49Cyclin-dependent kinase 22.7.11.220.479
1v1k3FPCyclin-dependent kinase 22.7.11.220.478
2iw84SPCyclin-dependent kinase 22.7.11.220.477
3r7vZ02Cyclin-dependent kinase 22.7.11.220.477
3rjc06ZCyclin-dependent kinase 22.7.11.220.477
2wxvWXVCyclin-dependent kinase 22.7.11.220.476
4fkr45KCyclin-dependent kinase 22.7.11.220.476
1ckpPVBCyclin-dependent kinase 22.7.11.220.475
1gih1PUCyclin-dependent kinase 22.7.11.220.475
1fvt106Cyclin-dependent kinase 22.7.11.220.474
2btsU32Cyclin-dependent kinase 22.7.11.220.474
1oitHDTCyclin-dependent kinase 22.7.11.220.473
4fkpLS5Cyclin-dependent kinase 22.7.11.220.473
1ke7LS3Cyclin-dependent kinase 22.7.11.220.472
3qxpX64Cyclin-dependent kinase 22.7.11.220.472
1ke8LS4Cyclin-dependent kinase 22.7.11.220.471
2b52D42Cyclin-dependent kinase 22.7.11.220.471
3r7eX88Cyclin-dependent kinase 22.7.11.220.471
3r7iX9ICyclin-dependent kinase 22.7.11.220.471
3ddpRC8Cyclin-dependent kinase 22.7.11.220.470
3ral04ZCyclin-dependent kinase 22.7.11.220.470
3s00Z60Cyclin-dependent kinase 22.7.11.220.470
4lyn1YGCyclin-dependent kinase 22.7.11.220.470
1pxkCK3Cyclin-dependent kinase 22.7.11.220.469
1unlRRCCyclin-dependent-like kinase 52.7.11.10.469
2vu3LZECyclin-dependent kinase 22.7.11.220.469
4fkw62KCyclin-dependent kinase 22.7.11.220.469
2r3o2SCCyclin-dependent kinase 22.7.11.220.468
3qruX19Cyclin-dependent kinase 22.7.11.220.468
3dogNNNCyclin-dependent kinase 22.7.11.220.467
3r9dX6BCyclin-dependent kinase 22.7.11.220.467
1w0xOLOCyclin-dependent kinase 22.7.11.220.466
3qqkX02Cyclin-dependent kinase 22.7.11.220.466
1gij2PUCyclin-dependent kinase 22.7.11.220.465
3sw418KCyclin-dependent kinase 22.7.11.220.465
1ke5LS1Cyclin-dependent kinase 22.7.11.220.464
3r8uZ31Cyclin-dependent kinase 22.7.11.220.464
1oi9N20Cyclin-dependent kinase 22.7.11.220.463
1ykr628Cyclin-dependent kinase 22.7.11.220.463
3qziX72Cyclin-dependent kinase 22.7.11.220.463
4eor4SPCyclin-dependent kinase 22.7.11.220.463
1vyw292Cyclin-dependent kinase 22.7.11.220.462
1vyzN5BCyclin-dependent kinase 22.7.11.220.462
2c6kDT2Cyclin-dependent kinase 22.7.11.220.462
2i40BLZCyclin-dependent kinase 22.7.11.220.461
2uzoC62Cyclin-dependent kinase 22.7.11.220.461
1oguST8Cyclin-dependent kinase 22.7.11.220.460
2r3fSC8Cyclin-dependent kinase 22.7.11.220.460
2a0cCK9Cyclin-dependent kinase 22.7.11.220.459
2c6lDT4Cyclin-dependent kinase 22.7.11.220.459
3r7uX96Cyclin-dependent kinase 22.7.11.220.459
4acm7YGCyclin-dependent kinase 22.7.11.220.458
1ke9LS5Cyclin-dependent kinase 22.7.11.220.457
2b55D31Cyclin-dependent kinase 22.7.11.220.457
3qqhX0ACyclin-dependent kinase 22.7.11.220.457
4fkt48KCyclin-dependent kinase 22.7.11.220.457
4bgh3I6Cyclin-dependent kinase 22.7.11.220.456
4ek610KCyclin-dependent kinase 22.7.11.220.456
1gii1PUCyclin-dependent kinase 22.7.11.220.455
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.455
3r1yX76Cyclin-dependent kinase 22.7.11.220.455
3rkb12ZCyclin-dependent kinase 22.7.11.220.455
2r3kSCQCyclin-dependent kinase 22.7.11.220.454
2uznC96Cyclin-dependent kinase 22.7.11.220.454
3lfqA28Cyclin-dependent kinase 22.7.11.220.454
1h1s4SPCyclin-dependent kinase 22.7.11.220.453
2iw94SPCyclin-dependent kinase 22.7.11.220.453
1di8DTQCyclin-dependent kinase 22.7.11.220.451
3ddqRRCCyclin-dependent kinase 22.7.11.220.451
3ezrEZRCyclin-dependent kinase 22.7.11.220.451
1h0vUN4Cyclin-dependent kinase 22.7.11.220.450
2j9mPY8Cyclin-dependent kinase 22.7.11.220.450
2vv9IM9Cyclin-dependent kinase 22.7.11.220.450
1y8yCT7Cyclin-dependent kinase 22.7.11.220.449
3qtsX46Cyclin-dependent kinase 22.7.11.220.449
3r8pZ46Cyclin-dependent kinase 22.7.11.220.449
4qmpDKISerine/threonine-protein kinase 242.7.11.10.449
2a4lRRCCyclin-dependent kinase 22.7.11.220.448
2x8iX8ISerine/threonine-protein kinase Chk12.7.11.10.448
3my5RFZCyclin-dependent kinase 22.7.11.220.448
1oiqHDUCyclin-dependent kinase 22.7.11.220.447
1pxlCK4Cyclin-dependent kinase 22.7.11.220.447
2bhhRYUCyclin-dependent kinase 22.7.11.220.447
2duv371Cyclin-dependent kinase 22.7.11.220.447
3unj0BXCyclin-dependent kinase 22.7.11.220.447
1k6tXN1Gag-Pol polyprotein3.4.23.160.446
1oiyN41Cyclin-dependent kinase 22.7.11.220.446
2b54D05Cyclin-dependent kinase 22.7.11.220.446
3ezvEZVCyclin-dependent kinase 22.7.11.220.446
4ivb1J5Tyrosine-protein kinase JAK1/0.446
3rmf20ZCyclin-dependent kinase 22.7.11.220.445
3sw719KCyclin-dependent kinase 22.7.11.220.445
2wpa889Cyclin-dependent kinase 22.7.11.220.444
4fx360KCyclin-dependent kinase 22.7.11.220.444
3a1cACPProbable copper-exporting P-type ATPase A3.6.3.540.443
3lfsA07Cyclin-dependent kinase 22.7.11.220.443
3ql8X01Cyclin-dependent kinase 22.7.11.220.443
3qtqX35Cyclin-dependent kinase 22.7.11.220.443
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.442
2broDF2Serine/threonine-protein kinase Chk12.7.11.10.441
2iw6QQ2Cyclin-dependent kinase 22.7.11.220.441
2vttLZDCyclin-dependent kinase 22.7.11.220.441
2w1hL0FCyclin-dependent kinase 22.7.11.220.441
3r8zZ63Cyclin-dependent kinase 22.7.11.220.441