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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3r6tLU1Catechol O-methyltransferase2.1.1.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3r6tLU1Catechol O-methyltransferase2.1.1.61.000
3oztOZZCatechol O-methyltransferase2.1.1.60.607
3nwe662Catechol O-methyltransferase2.1.1.60.603
3a7dFBNCatechol O-methyltransferase2.1.1.60.584
3ozsOZSCatechol O-methyltransferase2.1.1.60.580
1jr4CL4Catechol O-methyltransferase2.1.1.60.573
3nw9637Catechol O-methyltransferase2.1.1.60.530
3hvk719Catechol O-methyltransferase2.1.1.60.512
3oe4610Catechol O-methyltransferase2.1.1.60.508
3nwb659Catechol O-methyltransferase2.1.1.60.504
3oe5611Catechol O-methyltransferase2.1.1.60.488
3ozrOZRCatechol O-methyltransferase2.1.1.60.487
1susSAHCaffeoyl-CoA O-methyltransferase2.1.1.1040.475
3hvi619Catechol O-methyltransferase2.1.1.60.460
5f8eSAHPossible transcriptional regulatory protein/0.452
3tr6SAHO-methyltransferase/0.443