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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3qvsNADMyo-inositol-1-phosphate synthase (Ino1)

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3qvsNADMyo-inositol-1-phosphate synthase (Ino1)/1.000
3qvwNADMyo-inositol-1-phosphate synthase (Ino1)/0.733
3qvtNAIMyo-inositol-1-phosphate synthase (Ino1)/0.678
3qw2NADMyo-inositol-1-phosphate synthase (Ino1)/0.585
3qvxNADMyo-inositol-1-phosphate synthase (Ino1)/0.580
1u1iNADMyo-inositol-1-phosphate synthase (Ino1)/0.560
3cinNADMyo-inositol-1-phosphate synthase-related protein/0.545
1la2NADInositol-3-phosphate synthase5.5.1.40.498
3zdfNADGlyceraldehyde-3-phosphate dehydrogenase/0.482
2nu9COASuccinate--CoA ligase [ADP-forming] subunit alpha6.2.1.50.479
4bfvZVVPantothenate kinase2.7.1.330.475
1p1iNADInositol-3-phosphate synthase5.5.1.40.458
4dfg0JVGag-Pol polyprotein3.4.23.160.452
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.449
1me6IVSPlasmepsin-23.4.23.390.445
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.445
2gsdNADFormate dehydrogenase/0.444
3i7eDJRGag-Pol polyprotein/0.444
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.441
2nuaCOASuccinate--CoA ligase [ADP-forming] subunit alpha6.2.1.50.440
4z63ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.440