scPDB - Distribution of Binding site Similarity values of 3qv2 entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3qv2	SAH	5-cytosine DNA methyltransferase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3qv2	SAH	5-cytosine DNA methyltransferase	/	1.000
4h0n	SAH	Dnmt2	/	0.512
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.503
5mht	SAH	Modification methylase HhaI	2.1.1.37	0.502
8mht	SAH	Modification methylase HhaI	2.1.1.37	0.497
9mht	SAH	Modification methylase HhaI	2.1.1.37	0.497
2uyh	SAH	Modification methylase HhaI	2.1.1.37	0.495
1skm	SAH	Modification methylase HhaI	2.1.1.37	0.492
3pt6	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.491
2zcj	SAH	Modification methylase HhaI	2.1.1.37	0.489
4wxx	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.487
1mht	SAH	Modification methylase HhaI	2.1.1.37	0.468
2hmy	SAM	Modification methylase HhaI	2.1.1.37	0.468
2z6u	SAH	Modification methylase HhaI	2.1.1.37	0.464
3pt9	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.458
1dhj	MTX	Dihydrofolate reductase	1.5.1.3	0.453
2i9k	SAH	Modification methylase HhaI	2.1.1.37	0.453
4da4	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.452
10mh	SAH	Modification methylase HhaI	2.1.1.37	0.449
3drc	MTX	Dihydrofolate reductase	1.5.1.3	0.448
3mht	SAH	Modification methylase HhaI	2.1.1.37	0.447
4dfr	MTX	Dihydrofolate reductase	1.5.1.3	0.447
2c7q	SAH	Modification methylase HhaI	2.1.1.37	0.446
1fjx	SAH	Modification methylase HhaI	2.1.1.37	0.444