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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3qttANPPantothenate synthetase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3qttANPPantothenate synthetase/1.000
2x3fAPCPantothenate synthetase/0.528
4ddhMS0Pantothenate synthetase6.3.2.10.528
3ivgFG5Pantothenate synthetase6.3.2.10.476
5kwvANPPantothenate synthetase/0.476
1n2gAPCPantothenate synthetase6.3.2.10.474
5hg0SAMPantothenate synthetase/0.473
1n2iPAJPantothenate synthetase6.3.2.10.469
3isjA8DPantothenate synthetase6.3.2.10.468
1n2hPAJPantothenate synthetase6.3.2.10.467
3coz54HPantothenate synthetase6.3.2.10.464
3ioeA7DPantothenate synthetase6.3.2.10.455
1n2eAPCPantothenate synthetase6.3.2.10.454
4l2zS7MS-adenosylmethionine synthase/0.449
3iocA5DPantothenate synthetase6.3.2.10.440