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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3qls55VDihydrofolate reductase1.5.1.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3qls55VDihydrofolate reductase1.5.1.31.000
4h9614QDihydrofolate reductase1.5.1.30.639
3qlrQLRDihydrofolate reductase1.5.1.30.635
3qly55VUncharacterized protein/0.616
4h9753SDihydrofolate reductase1.5.1.30.615
3qlwN22Dihydrofolate reductase1.5.1.30.605
4ixeIXEDihydrofolate reductase1.5.1.30.604
1aoeGW3Dihydrofolate reductase1.5.1.30.603
1m7aMQUDihydrofolate reductase1.5.1.30.603
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.598
4h9506UDihydrofolate reductase1.5.1.30.597
1dg5TOPDihydrofolate reductase1.5.1.30.596
3qlxQLRUncharacterized protein/0.590
3eek53SUncharacterized protein/0.585
3qlzQLZUncharacterized protein/0.583
3cseN22Uncharacterized protein/0.582
1cd2FOLDihydrofolate reductase1.5.1.30.576
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.570
1klkPMDDihydrofolate reductase1.5.1.30.565
1rx3MTXDihydrofolate reductase1.5.1.30.565
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.564
2fziDH3Dihydrofolate reductase1.5.1.30.559
4h9814QUncharacterized protein/0.555
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.554
1m78CLZDihydrofolate reductase1.5.1.30.551
3eem53VUncharacterized protein/0.550
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.550
4m2xTMQDihydrofolate reductase1.5.1.30.550
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.548
1dajMOTDihydrofolate reductase1.5.1.30.545
1ia2TQ4Dihydrofolate reductase1.5.1.30.545
3ia4MTXDihydrofolate reductase/0.544
2zzaFOLDihydrofolate reductase/0.543
3eej53RUncharacterized protein/0.543
3eel53TUncharacterized protein/0.543
2w3vTOPDihydrofolate reductase/0.539
1dg7WRBDihydrofolate reductase1.5.1.30.537
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.537
1vj3TABDihydrofolate reductase1.5.1.30.536
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.533
1m79MQ1Dihydrofolate reductase1.5.1.30.532
4fgg0U5Dihydrofolate reductase1.5.1.30.531
2fzhDH1Dihydrofolate reductase1.5.1.30.530
4p66MTXDihydrofolate reductase/0.529
4xe606UDihydrofolate reductase1.5.1.30.529
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.528
1df7MTXDihydrofolate reductase1.5.1.30.524
1hfqMOTDihydrofolate reductase1.5.1.30.520
2blcCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.519
3dfrMTXDihydrofolate reductase1.5.1.30.519
1ddsMTXDihydrofolate reductase1.5.1.30.518
3freTOPDihydrofolate reductase1.5.1.30.518
3fywXCFDihydrofolate reductase1.5.1.30.518
4nx7FOLDihydrofolate reductase1.5.1.30.517
3qg2CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.516
4kbn25UDihydrofolate reductase1.5.1.30.513
4x5fFOLDihydrofolate reductase1.5.1.30.513
4fgh0U6Dihydrofolate reductase1.5.1.30.512
4ixfIXFDihydrofolate reductase1.5.1.30.511
4m6l21VDihydrofolate reductase1.5.1.30.511
2cd2FOLDihydrofolate reductase1.5.1.30.510
3jwcEKBDihydrofolate reductase/0.510
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.510
3td8D2RDihydrofolate reductase1.5.1.30.510
4nx6FOLDihydrofolate reductase1.5.1.30.510
1ia1TQ3Dihydrofolate reductase1.5.1.30.509
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.507
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.506
3sh25DRDihydrofolate reductase1.5.1.30.505
3fraI2HDihydrofolate reductase1.5.1.30.504
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.503
3dg8RJ6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.502
3tq9MTXDihydrofolate reductase/0.501
3jwm5WBDihydrofolate reductase/0.500
3ix9MTXDihydrofolate reductase1.5.1.30.499
4x5iFOLDihydrofolate reductase1.5.1.30.499
4x5jFOLDihydrofolate reductase1.5.1.30.499
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.498
3tqbFOLDihydrofolate reductase/0.497
4cd2FOLDihydrofolate reductase1.5.1.30.497
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.496
1jolFFODihydrofolate reductase1.5.1.30.495
3frfXCFDihydrofolate reductase1.5.1.30.495
1drbMTXDihydrofolate reductase1.5.1.30.494
3cd2MTXDihydrofolate reductase1.5.1.30.494
3sa16DRDihydrofolate reductase/0.494
4ej1FOLDihydrofolate reductase1.5.1.30.494
4ixgIXGDihydrofolate reductase1.5.1.30.493
4kebFOLDihydrofolate reductase1.5.1.30.493
4x5gFOLDihydrofolate reductase1.5.1.30.493
1hfpMOTDihydrofolate reductase1.5.1.30.492
1rb3MTXDihydrofolate reductase1.5.1.30.492
3sa27DRDihydrofolate reductase/0.492
3srqQ19Dihydrofolate reductase1.5.1.30.492
1ddrMTXDihydrofolate reductase1.5.1.30.491
4r20AERCytochrome P450 family 17 polypeptide 2/0.491
2vcmM11Isopenicillin N synthase1.21.3.10.490
1j3jCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.489
1draMTXDihydrofolate reductase1.5.1.30.488
1re7FOLDihydrofolate reductase1.5.1.30.488
2drcMTXDihydrofolate reductase1.5.1.30.487
3l3rOAGDihydrofolate reductase1.5.1.30.486
4dphP65Bifunctional dihydrofolate reductase-thymidylate synthase/0.486
1e26GPBDihydrofolate reductase1.5.1.30.485
1diuBDMDihydrofolate reductase1.5.1.30.483
1kmsLIHDihydrofolate reductase1.5.1.30.483
3frdDHFDihydrofolate reductase1.5.1.30.483
3m08RARDihydrofolate reductase1.5.1.30.483
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.483
4kd79DRDihydrofolate reductase1.5.1.30.482
1uzwCDHIsopenicillin N synthase1.21.3.10.481
3zoiM2WIsopenicillin N synthase1.21.3.10.481
1dhfFOLDihydrofolate reductase1.5.1.30.480
3clbTMQBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.480
5cccDDFDihydrofolate reductase1.5.1.30.480
1fmjRTLRetinol dehydratase/0.479
3fy9XCFDihydrofolate reductase1.5.1.30.479
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.478
7dfrFOLDihydrofolate reductase1.5.1.30.478
3drcMTXDihydrofolate reductase1.5.1.30.477
1ia3TQ5Dihydrofolate reductase1.5.1.30.476
3d80Q22Dihydrofolate reductase1.5.1.30.476
4g8zTOPDihydrofolate reductase1.5.1.30.476
1bk0ACVIsopenicillin N synthase1.21.3.10.475
2fzjDH3Dihydrofolate reductase1.5.1.30.475
2jb4A14Isopenicillin N synthase1.21.3.10.475
4dp3MMVBifunctional dihydrofolate reductase-thymidylate synthase/0.475
2blbCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.474
2wo7ASVIsopenicillin N synthase1.21.3.10.474
3lu8IQXSerum albumin/0.474
2zbaZBATrichothecene 3-O-acetyltransferase/0.473
3jw5TOPDihydrofolate reductase/0.473
1blzACVIsopenicillin N synthase1.21.3.10.472
1ia4TQ6Dihydrofolate reductase1.5.1.30.472
2w3mFOLDihydrofolate reductase1.5.1.30.471
1qzfFOLBifunctional dihydrofolate reductase-thymidylate synthase/0.470
2w3aTOPDihydrofolate reductase1.5.1.30.470
3och2MXDihydrofolate reductase1.5.1.30.470
1disBDMDihydrofolate reductase1.5.1.30.469
4bb3KKAIsopenicillin N synthase1.21.3.10.469
1pkfEPDEpothilone C/D epoxidase1.140.468
4kfj1R0Dihydrofolate reductase1.5.1.30.468
2vbpVB1Isopenicillin N synthase1.21.3.10.467
2iviACWIsopenicillin N synthase1.21.3.10.466
2y60M8FIsopenicillin N synthase1.21.3.10.466
3oafOAGDihydrofolate reductase1.5.1.30.466
4kak06UDihydrofolate reductase1.5.1.30.466
1rd7FOLDihydrofolate reductase1.5.1.30.465
2bu9HFVIsopenicillin N synthase1.21.3.10.465
2w9gTOPDihydrofolate reductase1.5.1.30.465
4g95OAGDihydrofolate reductase1.5.1.30.465
2chw039Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.464
3sai9DRDihydrofolate reductase/0.464
4dfrMTXDihydrofolate reductase1.5.1.30.464
1hb1OCVIsopenicillin N synthase1.21.3.10.463
3vt5YI2Vitamin D3 receptor/0.463
4fjyFJYPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.463
4jlj1NMDeoxycytidine kinase2.7.1.740.463
3k47D09Dihydrofolate reductase1.5.1.30.462
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.462
1oc1ASVIsopenicillin N synthase1.21.3.10.461
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.461
4ia1BIVVitamin D3 receptor A/0.461
4p68MTXDihydrofolate reductase/0.461
5hi6MTXDihydrofolate reductase/0.461
2d0kFOLDihydrofolate reductase1.5.1.30.460
2vbdV10Isopenicillin N synthase1.21.3.10.460
4fhbFOLDihydrofolate reductase1.5.1.30.460
1tdrMTXDihydrofolate reductase1.5.1.30.459
4enhFVXCholesterol 24-hydroxylase/0.459
1hb3SCVIsopenicillin N synthase1.21.3.10.458
1kijNOVDNA gyrase subunit B/0.458
3eigMTXDihydrofolate reductase1.5.1.30.458
4j6dTESCytochrome P450 monooxygenase/0.458
1dhjMTXDihydrofolate reductase1.5.1.30.457
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.457
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.457
1w06W05Isopenicillin N synthase1.21.3.10.456
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.456
1ohjCOPDihydrofolate reductase1.5.1.30.455
2vn0TDZCytochrome P450 2C8/0.455
3ezpB3NHistone deacetylase 83.5.1.980.455
3s3vTOPDihydrofolate reductase1.5.1.30.455
3sgy06WDihydrofolate reductase1.5.1.30.455
4elb34SDihydrofolate reductase/0.455
4jbtASDCytochrome P450 monooxygenase/0.455
2y6fM9FIsopenicillin N synthase1.21.3.10.454
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.454
3ql3FOLDihydrofolate reductase1.5.1.30.454
1ohkCOPDihydrofolate reductase1.5.1.30.453
2dhfDZFDihydrofolate reductase1.5.1.30.453
2po7CHDFerrochelatase, mitochondrial4.99.1.10.453
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.453
3srwQ27Dihydrofolate reductase1.5.1.30.453
4imw1EVNitric oxide synthase, brain1.14.13.390.453
3ghwGHWDihydrofolate reductase1.5.1.30.452
3ntz3TZDihydrofolate reductase1.5.1.30.452
3sgv2BJDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.452
1upw444Oxysterols receptor LXR-beta/0.451
4elg52JDihydrofolate reductase/0.451
1ly3COGDihydrofolate reductase1.5.1.30.450
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.450
3zkuHCVIsopenicillin N synthase1.21.3.10.450
3zkyWT4Isopenicillin N synthase1.21.3.10.450
4ele31IDihydrofolate reductase/0.450
4ia7BIVVitamin D3 receptor A/0.450
1m13HYFNuclear receptor subfamily 1 group I member 2/0.449
1rf7DHFDihydrofolate reductase1.5.1.30.449
2hcdBIVVitamin D3 receptor A/0.449
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.449
1ly4COQDihydrofolate reductase1.5.1.30.448
1qiqACCIsopenicillin N synthase1.21.3.10.448
2jj2ANPATP synthase subunit beta, mitochondrial3.6.3.140.448
2zl9VDAVitamin D3 receptor/0.448
3atzFMNProstaglandin F2a synthase/0.448
3tq8TOPDihydrofolate reductase/0.448
3bejMUFBile acid receptor/0.447
3qm4PN0Cytochrome P450 2D6/0.447
3rg9WRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.447
3w0aDS5Vitamin D3 receptor/0.447
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.447
1cjkFOKAdenylate cyclase type 2/0.446
1cjkFOKAdenylate cyclase type 5/0.446
2rqfJH3Hemolymph juvenile hormone binding protein/0.446
3gi2GHWDihydrofolate reductase1.5.1.30.446
3vt65YIVitamin D3 receptor/0.446
4r21STRCytochrome P450 family 17 polypeptide 2/0.446
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
3fy8XCFDihydrofolate reductase1.5.1.30.445
3gyf51PDihydrofolate reductase1.5.1.30.445
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.445
1jomFFODihydrofolate reductase1.5.1.30.444
1kl2FONSerine hydroxymethyltransferase/0.444
1o6rR19Squalene--hopene cyclase4.2.1.1290.444
3tdaPN0Cytochrome P450 2D6/0.444
3vrwYS5Vitamin D3 receptor/0.444
4luxQJ8Nitric oxide synthase, brain1.14.13.390.444
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.444
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.443
4v12POGMaoC like domain protein/0.443
1dhiMTXDihydrofolate reductase1.5.1.30.442
2e98B29Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.442
3csdEMOPutative ketoacyl reductase1.3.10.442
3nxrD2DDihydrofolate reductase1.5.1.30.442
1s3yTQTDihydrofolate reductase1.5.1.30.441
2hb7O1CVitamin D3 receptor/0.441
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
3kpzZNEVitamin D3 receptor/0.441
3l0lHC3Nuclear receptor ROR-gamma/0.441
3n0hTOPDihydrofolate reductase1.5.1.30.441
3nlqJRRNitric oxide synthase, brain1.14.13.390.441
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
4nieNBHNuclear receptor ROR-gamma/0.441
3pwhZMAAdenosine receptor A2a/0.441
3dauMTXDihydrofolate reductase1.5.1.30.440
3ijdC2FMethylenetetrahydrofolate reductase/0.440
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.440
4hni16WCasein kinase I isoform epsilon2.7.11.10.440
4o1mNADEnoyl-acyl carrier reductase/0.440
4o761M3Bromodomain-containing protein 4/0.440