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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3qlrQLRDihydrofolate reductase1.5.1.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3qlrQLRDihydrofolate reductase1.5.1.31.000
3qls55VDihydrofolate reductase1.5.1.30.651
4h9614QDihydrofolate reductase1.5.1.30.644
1aoeGW3Dihydrofolate reductase1.5.1.30.622
4h9753SDihydrofolate reductase1.5.1.30.615
3qlwN22Dihydrofolate reductase1.5.1.30.611
3qly55VUncharacterized protein/0.608
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.605
3eek53SUncharacterized protein/0.602
3cseN22Uncharacterized protein/0.598
3qlxQLRUncharacterized protein/0.598
4ixeIXEDihydrofolate reductase1.5.1.30.598
1m7aMQUDihydrofolate reductase1.5.1.30.594
1ia1TQ3Dihydrofolate reductase1.5.1.30.592
2fziDH3Dihydrofolate reductase1.5.1.30.584
3eem53VUncharacterized protein/0.582
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.579
4h9506UDihydrofolate reductase1.5.1.30.576
3eej53RUncharacterized protein/0.575
1m78CLZDihydrofolate reductase1.5.1.30.574
4h9814QUncharacterized protein/0.571
3eel53TUncharacterized protein/0.569
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.568
1klkPMDDihydrofolate reductase1.5.1.30.563
3qlzQLZUncharacterized protein/0.559
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.558
1dg5TOPDihydrofolate reductase1.5.1.30.557
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.556
1cd2FOLDihydrofolate reductase1.5.1.30.554
2cd2FOLDihydrofolate reductase1.5.1.30.549
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.548
1ia2TQ4Dihydrofolate reductase1.5.1.30.547
1m79MQ1Dihydrofolate reductase1.5.1.30.547
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.547
4ixfIXFDihydrofolate reductase1.5.1.30.547
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.546
1rx3MTXDihydrofolate reductase1.5.1.30.545
3dfrMTXDihydrofolate reductase1.5.1.30.545
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.545
3td8D2RDihydrofolate reductase1.5.1.30.542
1vj3TABDihydrofolate reductase1.5.1.30.541
2w3vTOPDihydrofolate reductase/0.539
4ixgIXGDihydrofolate reductase1.5.1.30.528
4g8zTOPDihydrofolate reductase1.5.1.30.527
4xe606UDihydrofolate reductase1.5.1.30.527
2blcCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.526
4m2xTMQDihydrofolate reductase1.5.1.30.526
2zzaFOLDihydrofolate reductase/0.523
1dg7WRBDihydrofolate reductase1.5.1.30.520
1hfqMOTDihydrofolate reductase1.5.1.30.520
3freTOPDihydrofolate reductase1.5.1.30.520
1dajMOTDihydrofolate reductase1.5.1.30.518
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.518
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.518
1ddsMTXDihydrofolate reductase1.5.1.30.517
1e26GPBDihydrofolate reductase1.5.1.30.517
3jwm5WBDihydrofolate reductase/0.517
3sa16DRDihydrofolate reductase/0.516
3sh25DRDihydrofolate reductase1.5.1.30.515
2fzhDH1Dihydrofolate reductase1.5.1.30.514
3cd2MTXDihydrofolate reductase1.5.1.30.514
3tq9MTXDihydrofolate reductase/0.512
3frdDHFDihydrofolate reductase1.5.1.30.511
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.509
4kbn25UDihydrofolate reductase1.5.1.30.507
3jwcEKBDihydrofolate reductase/0.506
3fywXCFDihydrofolate reductase1.5.1.30.505
4cd2FOLDihydrofolate reductase1.5.1.30.505
4fgg0U5Dihydrofolate reductase1.5.1.30.505
3clbTMQBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.504
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.504
3qg2CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.504
1diuBDMDihydrofolate reductase1.5.1.30.503
3fy9XCFDihydrofolate reductase1.5.1.30.502
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.501
4m6l21VDihydrofolate reductase1.5.1.30.501
1hfpMOTDihydrofolate reductase1.5.1.30.500
4dp3MMVBifunctional dihydrofolate reductase-thymidylate synthase/0.500
4fgh0U6Dihydrofolate reductase1.5.1.30.500
4kak06UDihydrofolate reductase1.5.1.30.500
1ly3COGDihydrofolate reductase1.5.1.30.499
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.498
3dg8RJ6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.497
3i8aN22Dihydrofolate reductase1.5.1.30.496
3tqbFOLDihydrofolate reductase/0.495
7dfrFOLDihydrofolate reductase1.5.1.30.495
1ia3TQ5Dihydrofolate reductase1.5.1.30.494
1df7MTXDihydrofolate reductase1.5.1.30.493
3sai9DRDihydrofolate reductase/0.492
3jw5TOPDihydrofolate reductase/0.491
3k47D09Dihydrofolate reductase1.5.1.30.491
1j3jCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.490
3frfXCFDihydrofolate reductase1.5.1.30.490
3ia4MTXDihydrofolate reductase/0.490
3srqQ19Dihydrofolate reductase1.5.1.30.490
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.489
3oafOAGDihydrofolate reductase1.5.1.30.489
3sgv2BJDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.489
4nx6FOLDihydrofolate reductase1.5.1.30.489
2blbCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.488
2drcMTXDihydrofolate reductase1.5.1.30.488
1qzfFOLBifunctional dihydrofolate reductase-thymidylate synthase/0.487
1disBDMDihydrofolate reductase1.5.1.30.486
4kd79DRDihydrofolate reductase1.5.1.30.486
4kjjFOLDihydrofolate reductase1.5.1.30.486
5cccDDFDihydrofolate reductase1.5.1.30.486
3fraI2HDihydrofolate reductase1.5.1.30.485
4dphP65Bifunctional dihydrofolate reductase-thymidylate synthase/0.485
1s3yTQTDihydrofolate reductase1.5.1.30.484
1fmjRTLRetinol dehydratase/0.482
2w3aTOPDihydrofolate reductase1.5.1.30.482
4kfj1R0Dihydrofolate reductase1.5.1.30.482
1ia4TQ6Dihydrofolate reductase1.5.1.30.481
3jsuKA5Bifunctional dihydrofolate reductase-thymidylate synthase/0.481
1draMTXDihydrofolate reductase1.5.1.30.479
3ql3FOLDihydrofolate reductase1.5.1.30.479
3vt5YI2Vitamin D3 receptor/0.479
4p66MTXDihydrofolate reductase/0.478
1ek2CDUBifunctional epoxide hydrolase 2/0.477
1re7FOLDihydrofolate reductase1.5.1.30.477
4iui1GQEstrogen receptor/0.477
2vn0TDZCytochrome P450 2C8/0.476
3sa27DRDihydrofolate reductase/0.476
4nx7FOLDihydrofolate reductase1.5.1.30.475
1m13HYFNuclear receptor subfamily 1 group I member 2/0.474
3sgy06WDihydrofolate reductase1.5.1.30.474
4x5gFOLDihydrofolate reductase1.5.1.30.471
2zbaZBATrichothecene 3-O-acetyltransferase/0.470
3ix9MTXDihydrofolate reductase1.5.1.30.470
4ele31IDihydrofolate reductase/0.470
4fhf0TTSpore photoproduct lyase/0.470
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.470
4j6cSTRCytochrome P450 monooxygenase/0.469
1bozPRDDihydrofolate reductase1.5.1.30.468
1dhfFOLDihydrofolate reductase1.5.1.30.468
2w3wVG9Dihydrofolate reductase/0.468
3drcMTXDihydrofolate reductase1.5.1.30.468
4x5jFOLDihydrofolate reductase1.5.1.30.468
1dhjMTXDihydrofolate reductase1.5.1.30.467
1jolFFODihydrofolate reductase1.5.1.30.467
1pkfEPDEpothilone C/D epoxidase1.140.467
2w9gTOPDihydrofolate reductase1.5.1.30.467
3eigMTXDihydrofolate reductase1.5.1.30.467
3nj0PYVAbscisic acid receptor PYL2/0.467
3l3rOAGDihydrofolate reductase1.5.1.30.466
4ej1FOLDihydrofolate reductase1.5.1.30.466
1dyiFOLDihydrofolate reductase1.5.1.30.465
3ad9NADSubunit alpha of sarocosine oxidase/0.465
3nxvD2FDihydrofolate reductase1.5.1.30.465
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.465
1rc4DDFDihydrofolate reductase1.5.1.30.464
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.464
3och2MXDihydrofolate reductase1.5.1.30.464
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.464
2chw039Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.463
4r20AERCytochrome P450 family 17 polypeptide 2/0.463
1tdrMTXDihydrofolate reductase1.5.1.30.462
2uxhQUEHTH-type transcriptional regulator TtgR/0.462
3sqyQ11Dihydrofolate reductase1.5.1.30.462
4cukNAID-lactate dehydrogenase/0.462
2vbpVB1Isopenicillin N synthase1.21.3.10.461
3fy8XCFDihydrofolate reductase1.5.1.30.461
3kpzZNEVitamin D3 receptor/0.461
1ly4COQDihydrofolate reductase1.5.1.30.460
1q5dEPBEpothilone C/D epoxidase1.140.460
1rb3MTXDihydrofolate reductase1.5.1.30.460
3cv9VDXVitamin D3 dihydroxylase/0.460
3d80Q22Dihydrofolate reductase1.5.1.30.460
3fl8RARDihydrofolate reductase/0.460
3srwQ27Dihydrofolate reductase1.5.1.30.460
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.460
4ia1BIVVitamin D3 receptor A/0.460
4kebFOLDihydrofolate reductase1.5.1.30.460
4x5fFOLDihydrofolate reductase1.5.1.30.460
1rf7DHFDihydrofolate reductase1.5.1.30.459
1ddrMTXDihydrofolate reductase1.5.1.30.458
1upw444Oxysterols receptor LXR-beta/0.458
2zlcVDXVitamin D3 receptor/0.458
3m08RARDihydrofolate reductase1.5.1.30.458
4dfrMTXDihydrofolate reductase1.5.1.30.458
1jioDEB6-deoxyerythronolide B hydroxylase/0.457
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.457
4enhFVXCholesterol 24-hydroxylase/0.457
1ohjCOPDihydrofolate reductase1.5.1.30.456
2vcmM11Isopenicillin N synthase1.21.3.10.456
3ntz3TZDihydrofolate reductase1.5.1.30.456
3zoiM2WIsopenicillin N synthase1.21.3.10.456
1jomFFODihydrofolate reductase1.5.1.30.455
3srrQ20Dihydrofolate reductase1.5.1.30.455
4ia7BIVVitamin D3 receptor A/0.455
1bzfTMQDihydrofolate reductase1.5.1.30.454
1rx8FOLDihydrofolate reductase1.5.1.30.454
4m7vRARDihydrofolate reductase/0.454
4zasTYDCalS13/0.454
1d2sDHTSex hormone-binding globulin/0.453
1cjkFOKAdenylate cyclase type 2/0.452
1cjkFOKAdenylate cyclase type 5/0.452
2vbdV10Isopenicillin N synthase1.21.3.10.452
3mdvCL6Cholesterol 24-hydroxylase/0.452
4fjyFJYPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.452
1ie9VDXVitamin D3 receptor/0.451
1oc1ASVIsopenicillin N synthase1.21.3.10.451
2uxoTACHTH-type transcriptional regulator TtgR/0.451
3s3vTOPDihydrofolate reductase1.5.1.30.451
3tq8TOPDihydrofolate reductase/0.451
4i1nFOLDihydrofolate reductase1.5.1.30.451
1blzACVIsopenicillin N synthase1.21.3.10.450
1kmsLIHDihydrofolate reductase1.5.1.30.450
1pp9SMACytochrome b/0.450
3vtcTK3Vitamin D3 receptor/0.450
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.450
4o761M3Bromodomain-containing protein 4/0.450
4p68MTXDihydrofolate reductase/0.450
1dhiMTXDihydrofolate reductase1.5.1.30.449
1drbMTXDihydrofolate reductase1.5.1.30.449
1hfrMOTDihydrofolate reductase1.5.1.30.449
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.449
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.449
4iv21GREstrogen receptor/0.449
3ar4TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.448
3fyvXCFDihydrofolate reductase1.5.1.30.448
3gyf51PDihydrofolate reductase1.5.1.30.448
3ozd4CTS-methyl-5'-thioadenosine phosphorylase/0.448
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.448
1dyrTOPDihydrofolate reductase1.5.1.30.447
2fzjDH3Dihydrofolate reductase1.5.1.30.447
3ghwGHWDihydrofolate reductase1.5.1.30.447
3lfcZ86Mitogen-activated protein kinase 14/0.447
3mg3ECHOrange carotenoid-binding protein/0.447
3sn7540cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.447
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.447
1i58ACPChemotaxis protein CheA2.7.13.30.446
1og5SWFCytochrome P450 2C9/0.446
1rx2FOLDihydrofolate reductase1.5.1.30.446
2uxpCLMHTH-type transcriptional regulator TtgR/0.446
2w3mFOLDihydrofolate reductase1.5.1.30.446
3inxJZCHeat shock protein HSP 90-alpha/0.446
3vt65YIVitamin D3 receptor/0.446
4elg52JDihydrofolate reductase/0.446
4g1z0VPVitamin D3 receptor A/0.446
4jlk1NODeoxycytidine kinase2.7.1.740.446
1bk0ACVIsopenicillin N synthase1.21.3.10.445
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
4l9q9TPSerum albumin/0.445
5d7q4I5NAD-dependent protein deacetylase sirtuin-23.5.10.445
2jfaRALEstrogen receptor/0.444
4bfrJ82Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform2.7.1.1530.444
4g95OAGDihydrofolate reductase1.5.1.30.444
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.444
4x5iFOLDihydrofolate reductase1.5.1.30.444
1uzwCDHIsopenicillin N synthase1.21.3.10.443
2jb4A14Isopenicillin N synthase1.21.3.10.443
2po7CHDFerrochelatase, mitochondrial4.99.1.10.443
3adaNADSubunit alpha of sarocosine oxidase/0.443
3p99LNPLanosterol 14-alpha-demethylase/0.443
3zkyWT4Isopenicillin N synthase1.21.3.10.443
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
1e90MYCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
1jipKTN6-deoxyerythronolide B hydroxylase/0.442
1l2jETCEstrogen receptor beta/0.442
1qiqACCIsopenicillin N synthase1.21.3.10.442
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
2hcdBIVVitamin D3 receptor A/0.442
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.442
3dauMTXDihydrofolate reductase1.5.1.30.442
3qm4PN0Cytochrome P450 2D6/0.442
4j6bPLOCytochrome P450 monooxygenase/0.442
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.442
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.442
1kijNOVDNA gyrase subunit B/0.441
1ohkCOPDihydrofolate reductase1.5.1.30.441
1rx6DDFDihydrofolate reductase1.5.1.30.441
4ib4ERM5-hydroxytryptamine receptor 2B/0.441
1culFOKAdenylate cyclase type 2/0.440
1culFOKAdenylate cyclase type 5/0.440
1e7vLY2Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.440
3qdd94MHeat shock protein HSP 90-alpha/0.440
3srsM23Dihydrofolate reductase1.5.1.30.440
4elb34RDihydrofolate reductase/0.440