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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3qdlFMNOxygen-insensitive NADPH nitroreductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3qdlFMNOxygen-insensitive NADPH nitroreductase/1.000
3ge6FMNNitroreductase/0.515
1kqdFMNOxygen-insensitive NAD(P)H nitroreductase/0.474
1ylrFMNOxygen-insensitive NAD(P)H nitroreductase/0.471
1kqcFMNOxygen-insensitive NAD(P)H nitroreductase/0.469
3x21FMNOxygen-insensitive NAD(P)H nitroreductase/0.466
1vfrFMNMajor NAD(P)H-flavin oxidoreductase1.6.990.462
1icuFMNOxygen-insensitive NAD(P)H nitroreductase/0.458
2hayFMNPutative NAD(P)H-flavin oxidoreductase/0.451
1ooqFMNOxygen-insensitive NAD(P)H nitroreductase/0.450
1yluFMNOxygen-insensitive NAD(P)H nitroreductase/0.449
4qlyFMNEnone reductase CLA-ER/0.446
3eo8FMNPutative nitroreductase/0.442
1oonFMNOxygen-insensitive NAD(P)H nitroreductase/0.441
2freFMNNAD(P)H-flavin oxidoreductase/0.441