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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3qbjNXZDipeptidyl peptidase 4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3qbjNXZDipeptidyl peptidase 4/1.000
3vjlW94Dipeptidyl peptidase 4/0.571
3vjkM51Dipeptidyl peptidase 4/0.563
3f8sPF2Dipeptidyl peptidase 4/0.562
3opmLUIDipeptidyl peptidase 4/0.557
3ccc7ACDipeptidyl peptidase 4/0.546
4ffw715Dipeptidyl peptidase 4/0.531
3ccbB2YDipeptidyl peptidase 4/0.522
4g1f0WGDipeptidyl peptidase 4/0.519
3g0bT22Dipeptidyl peptidase 4/0.516
2rgu356Dipeptidyl peptidase 4/0.502
2aj8SC3Dipeptidyl peptidase 4/0.498
3g0gRUMDipeptidyl peptidase 4/0.485
2oaeAILDipeptidyl peptidase 4/0.482
3g0dXIHDipeptidyl peptidase 4/0.479
3nubUD0UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase2.6.1.980.471
3hdyGDUUDP-galactopyranose mutase/0.459
3qgf46FGenome polyprotein2.7.7.480.454
2xuoTZ4Acetylcholinesterase3.1.1.70.449
2qimZEAClass 10 plant pathogenesis-related protein/0.446
2xugTZ4Acetylcholinesterase3.1.1.70.446
1vf3GDNGlutathione S-transferase 32.5.1.180.444
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.444
4fapARDPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.443
4fapARDSerine/threonine-protein kinase mTOR2.7.11.10.443
2g247IGRenin3.4.23.150.441
2hm1LIQBeta-secretase 13.4.23.460.441