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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3q71AR6Poly [ADP-ribose] polymerase 142.4.2.30

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3q71AR6Poly [ADP-ribose] polymerase 142.4.2.301.000
3vfqAR6Poly [ADP-ribose] polymerase 142.4.2.300.560
4d86ADPPoly [ADP-ribose] polymerase 142.4.2.300.540
5dbgNADIridoid synthase1.3.1.990.457
4jbiNDPAlcohol dehydrogenase (Zinc)/0.443
2y05NAPProstaglandin reductase 1/0.442
5dbfNDPIridoid synthase1.3.1.990.441
5a3bAPRSIR2 family protein/0.440
5cmsAPRO-acetyl-ADP-ribose deacetylase/0.440