Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3q0vLL4HTH-type transcriptional regulator EthR

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3q0vLL4HTH-type transcriptional regulator EthR/1.000
3sfi3SFHTH-type transcriptional regulator EthR/0.631
3g1mRF3HTH-type transcriptional regulator EthR/0.629
3o8gO8GHTH-type transcriptional regulator EthR/0.628
3q0uLL3HTH-type transcriptional regulator EthR/0.624
3o8hO8HHTH-type transcriptional regulator EthR/0.612
3tp0FO5HTH-type transcriptional regulator EthR/0.608
4dw60MNHTH-type transcriptional regulator EthR/0.483
3p6pA6BCamphor 5-monooxygenase1.14.15.10.461
3iupNDPPossible NADH oxidoreductase/0.455
3g1oRF1HTH-type transcriptional regulator EthR/0.450
3antS82Bifunctional epoxide hydrolase 23.3.2.100.448
2q9fC3SCholesterol 24-hydroxylase/0.447
3g1lRF2HTH-type transcriptional regulator EthR/0.447
4at0FADPossible succinate dehydrogenase/0.445