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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3pxvFMNNitroreductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3pxvFMNNitroreductase/1.000
3ge6FMNNitroreductase/0.516
1oonFMNOxygen-insensitive NAD(P)H nitroreductase/0.501
3qdlFMNOxygen-insensitive NADPH nitroreductase/0.489
3eofFMNPutative oxidase/0.477
1necFMNOxygen-insensitive NAD(P)H nitroreductase10.473
3x21FMNOxygen-insensitive NAD(P)H nitroreductase/0.473
2freFMNNAD(P)H-flavin oxidoreductase/0.471
1icuFMNOxygen-insensitive NAD(P)H nitroreductase/0.470
1ylrFMNOxygen-insensitive NAD(P)H nitroreductase/0.467
4qlyFMNEnone reductase CLA-ER/0.467
1icvFMNOxygen-insensitive NAD(P)H nitroreductase/0.462
1kqdFMNOxygen-insensitive NAD(P)H nitroreductase/0.458
1vfrFMNMajor NAD(P)H-flavin oxidoreductase1.6.990.458
3koqFMNPutative nitroreductase/0.456
1kqbFMNOxygen-insensitive NAD(P)H nitroreductase/0.453
3x22FMNOxygen-insensitive NAD(P)H nitroreductase/0.442