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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3pdtADPMyosin heavy chain kinase A2.7.11.7

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3pdtADPMyosin heavy chain kinase A2.7.11.71.000
3llaACPMyosin heavy chain kinase A2.7.11.70.541
3lmiATPMyosin heavy chain kinase A2.7.11.70.519
1ia9ANPTransient receptor potential cation channel subfamily M member 72.7.11.10.505
4zmeADNMyosin heavy chain kinase A2.7.11.70.501
4zs4ATPMyosin heavy chain kinase A2.7.11.70.495
1iahADPTransient receptor potential cation channel subfamily M member 72.7.11.10.477
5e9eANPMyosin heavy chain kinase A2.7.11.70.466
3d5wADPSerine/threonine-protein kinase PLK/0.444
3ncz3NCRho-associated protein kinase 12.7.11.10.440