scPDB - Distribution of Binding site Similarity values of 3pdq entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3pdq	KC6	Lysine-specific demethylase 4A	1.14.11

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3pdq	KC6	Lysine-specific demethylase 4A	1.14.11	1.000
4gd4	0WS	Lysine-specific demethylase 4A	1.14.11	0.586
3rvh	HQ2	Lysine-specific demethylase 4A	1.14.11	0.569
2wwj	Y28	Lysine-specific demethylase 4A	/	0.506
4bis	8HQ	Lysine-specific demethylase 4A	1.14.11	0.469