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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3pb3SAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.180

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3pb3SAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1801.000
3p2eSAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1800.689
3p2kSAM16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1800.475
1ec3MS3Gag-Pol polyprotein3.4.23.160.454
4dfg0JVGag-Pol polyprotein3.4.23.160.453
2qnqQN3Gag-Pol polyprotein3.4.23.160.447
1hiiC20Gag-Pol polyprotein/0.443
4yryFADGlutamate synthase, beta subunit/0.441
2po7CHDFerrochelatase, mitochondrial4.99.1.10.440
2qd6065Gag-Pol polyprotein3.4.23.160.440