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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3p93KDGD-galactonate dehydratase family member ManD4.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3p93KDGD-galactonate dehydratase family member ManD4.2.11.000
2geuCOKPantothenate kinase2.7.1.330.479
1touB1VFatty acid-binding protein, adipocyte/0.466
2zseACPPantothenate kinase2.7.1.330.463
1cq7PY5Aspartate aminotransferase2.6.1.10.459
1toiHCIAspartate aminotransferase2.6.1.10.457
1tojHCIAspartate aminotransferase2.6.1.10.453
2wwjY28Lysine-specific demethylase 4A/0.452
4bftZVTPantothenate kinase2.7.1.330.448
1foaUD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase2.4.1.1010.444
3rvhHQ2Lysine-specific demethylase 4A1.14.110.442
2gesCOKPantothenate kinase2.7.1.330.440