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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3p84FMNPentaerythritol tetranitrate reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3p84FMNPentaerythritol tetranitrate reductase/1.000
3p8jFMNPentaerythritol tetranitrate reductase/0.858
3f03FMNPentaerythritol tetranitrate reductase/0.856
1h50FMNPentaerythritol tetranitrate reductase/0.622
1h63FMNPentaerythritol tetranitrate reductase/0.615
3p74FMNPentaerythritol tetranitrate reductase/0.598
1vyrFMNPentaerythritol tetranitrate reductase/0.595
2abbFMNPentaerythritol tetranitrate reductase/0.587
3p8iFMNPentaerythritol tetranitrate reductase/0.574
3p82FMNPentaerythritol tetranitrate reductase/0.555
3p62FMNPentaerythritol tetranitrate reductase/0.545
1icqFMN12-oxophytodienoate reductase 11.3.1.420.520
3p67FMNPentaerythritol tetranitrate reductase/0.511
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.510
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.493
1icsFMN12-oxophytodienoate reductase 11.3.1.420.492
1icpFMN12-oxophytodienoate reductase 11.3.1.420.487
4jicFMNGTN Reductase/0.484
1bwlFMNNADPH dehydrogenase 11.6.99.10.483
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.481
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.480
1h51FMNPentaerythritol tetranitrate reductase/0.479
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.472
4tmbFMNOld yellow enzyme/0.469
4e2dFMNDehydrogenase/0.464
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.461
4df2FMNNADPH dehydrogenase/0.460
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.458
3atzFMNProstaglandin F2a synthase/0.457
3gkaFMNN-ethylmaleimide reductase/0.456
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.450
4h6kFMNNADPH dehydrogenase 11.6.99.10.450
1oycFMNNADPH dehydrogenase 11.6.99.10.449
1z44FMNNADPH dehydrogenase/0.449
4awtFMNNADH:flavin oxidoreductase Sye1/0.449
4e2bFMNDehydrogenase/0.445
4rnxFMNNADPH dehydrogenase 11.6.99.10.445
4qnwFMNChanoclavine-I aldehyde reductase easA/0.440